View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_13 (Length: 281)
Name: NF13744_low_13
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 35409602 - 35409874
Alignment:
| Q |
9 |
gcagaacctgtgttaatcacagccatgaactttgttgcctgaaataagcttggcagtgatgatagaaagtatctctgcggatccttgacaaaggccgcgt |
108 |
Q |
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| T |
35409602 |
gcagaacctatgttaatcacagccatgaactttgttgcctgaaataagcttggcagtgatgatagaaagtatctctgcggatccttgacaaaggccgcgt |
35409701 |
T |
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| Q |
109 |
gatcaggaacctcctcattaggaattaattttcgcattaattgtggccggattggaacatatccaccataggggtattgactgaagttcaagacagcatg |
208 |
Q |
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| T |
35409702 |
gatcaggaacctcctcattaggaattaattttcgcattaattgtggccggattggaacatatccaccataggggtattgactgaagttcaagacagcatg |
35409801 |
T |
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| Q |
209 |
ttgcgctgatacagtccagataatggtggtaagcaaggagatgagatcctcaggggtgtttagtttaggccac |
281 |
Q |
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| T |
35409802 |
ttgcgctgatacagtccagataatggtggtaagcaaggagatgagatcctcaggggtgtttagtttaggccac |
35409874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 35408243 - 35408311
Alignment:
| Q |
12 |
gaacctgtgttaatcacagccatgaactttgttgcctgaaataagcttggcagtgatgatagaaagtat |
80 |
Q |
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| T |
35408243 |
gaacctatgttgatcacagccatgaaccttttcgcctgaaataaacttggcagtgatgacagaaagtat |
35408311 |
T |
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