View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13744_low_14 (Length: 272)

Name: NF13744_low_14
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13744_low_14
NF13744_low_14
[»] scaffold0219 (1 HSPs)
scaffold0219 (15-253)||(8343-8581)
[»] chr4 (4 HSPs)
chr4 (21-147)||(13924795-13924923)
chr4 (33-147)||(1053900-1054016)
chr4 (21-103)||(13925611-13925695)
chr4 (21-66)||(24666853-24666898)
[»] chr1 (5 HSPs)
chr1 (33-147)||(4059968-4060084)
chr1 (21-70)||(12449309-12449358)
chr1 (32-67)||(16450465-16450500)
chr1 (32-67)||(16460041-16460076)
chr1 (21-66)||(26240872-26240917)
[»] chr8 (3 HSPs)
chr8 (34-147)||(27243461-27243576)
chr8 (34-147)||(27255036-27255151)
chr8 (24-66)||(42663998-42664040)
[»] chr5 (4 HSPs)
chr5 (18-67)||(4095874-4095923)
chr5 (21-66)||(24565575-24565620)
chr5 (21-66)||(24606611-24606656)
chr5 (18-61)||(23257973-23258016)
[»] chr2 (4 HSPs)
chr2 (21-63)||(2655731-2655773)
chr2 (21-67)||(34595934-34595980)
chr2 (32-69)||(44296873-44296910)
chr2 (21-88)||(4716851-4716919)
[»] chr7 (2 HSPs)
chr7 (21-66)||(36611495-36611540)
chr7 (15-67)||(41965108-41965160)


Alignment Details
Target: scaffold0219 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 8343 - 8581
Alignment:
Q  15 cacagatggattttagagtgagggttcaattaaatccctcactggtggaccacaaagaaatacggttggatttatcaatgcatcatatttgttggaaaca 114  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8343 cacagatggattttagagtgaaggctcaattaaatccctcactggtggaccacaaagaaatacggttggatttatcaatgcatcatatttgttggaaaca 8442  T
Q  115 aaattaagaacatctacatgtttccacatacaaggcaaatttattgataataaaataacggagtgcaaaaaatatctagagggtactaaaccaaaacctt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8443 aaattaagaacatctacatgtttccacatacaaggcaaatttattgataataaaataacggagtgcaaaaaatatctagagggtactaaaccaaaacctt 8542  T
Q  215 atcaagaaaacatggtgaaggaaaacaaagtgtggtttt 253  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8543 atcaagaaaacatggtgaaggaaaacaaagtgtggtttt 8581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 13924795 - 13924923
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggaccacaaagaaa-tacggttggattta-tcaatgcatcatatttgttggaaacaaaat 118  Q
    |||||| ||| ||||||| ||||||||||||||||| |||||||||| || ||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  13924795 tggattctagggtgagggctcaattaaatccctcaccggtggaccacgaaaaaagtacggttgaatttaatcaatgcatcatatttgttggaaacaaaat 13924894  T
Q  119 taagaacatctacatgtttccacatacaa 147  Q
    || ||||||||||||||||||| ||||||    
T  13924895 taggaacatctacatgtttccaaatacaa 13924923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 1054016 - 1053900
Alignment:
Q  33 tgagggttcaattaaatccctcactggtggaccacaaagaaat-acggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatcta 130  Q
    |||||| ||||||||| ||||||   ||| ||||  ||||||| ||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  1054016 tgagggatcaattaaacccctcatcagtgaaccatgaagaaattacggttgaatttaatcaatggatcatatttgttgcaaacaaaattaagaacatcta 1053917  T
Q  131 catgtttccacatacaa 147  Q
     || ||||| |||||||    
T  1053916 tatctttccgcatacaa 1053900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 13925695 - 13925611
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggaccacaaagaaa-tacggttggat-ttatcaatgcatcatatt 103  Q
    |||||| || |||||||| |||| ||| |||||||| ||||||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  13925695 tggattctaaagtgagggatcaactaagtccctcaccggtggaccacaaagaaattacggttagatctaatcaatggatcatatt 13925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 24666898 - 24666853
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggacca 66  Q
    |||||| ||| |||||||||||||||| |||||| |||||||||||    
T  24666898 tggattatagggtgagggttcaattaagtccctccctggtggacca 24666853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 4060084 - 4059968
Alignment:
Q  33 tgagggttcaattaaatccctcactggtggaccacaaagaaa-tacggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatcta 130  Q
    |||||| |||||||||||| |||| |||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  4060084 tgagggctcaattaaatccgtcaccggtggaccacgaagaaagtacgattggatttaatcaatgcatcatatttgttggaaacaaaattaggaacatcta 4059985  T
Q  131 catgtttccacatacaa 147  Q
    |||||||||||||||||    
T  4059984 catgtttccacatacaa 4059968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 12449358 - 12449309
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggaccacaaa 70  Q
    |||||||||| ||||||| |||||||| |||||||| |||||||||||||    
T  12449358 tggattttagggtgagggatcaattaagtccctcaccggtggaccacaaa 12449309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 16450500 - 16450465
Alignment:
Q  32 gtgagggttcaattaaatccctcactggtggaccac 67  Q
    |||||||||||||||||||||||||||||| |||||    
T  16450500 gtgagggttcaattaaatccctcactggtgtaccac 16450465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 16460076 - 16460041
Alignment:
Q  32 gtgagggttcaattaaatccctcactggtggaccac 67  Q
    |||||||||||||||||||||||||||||| |||||    
T  16460076 gtgagggttcaattaaatccctcactggtgtaccac 16460041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 26240917 - 26240872
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggacca 66  Q
    |||||| ||| |||||||||||||||| |||||||| |||||||||    
T  26240917 tggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 27243461 - 27243576
Alignment:
Q  34 gagggttcaattaaatccctcactggtggaccacaaagaaat-acggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatctac 131  Q
    ||||| |||||||| |||||||| |||||||||| ||||||| || |||| ||||| |||||| ||||||||| ||| |||||||||||||||||||||     
T  27243461 gagggatcaattaagtccctcaccggtggaccacgaagaaattacagttgaatttaatcaatggatcatatttattgcaaacaaaattaagaacatctat 27243560  T
Q  132 atgtttccacatacaa 147  Q
    || ||||| |||||||    
T  27243561 atctttccgcatacaa 27243576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 27255036 - 27255151
Alignment:
Q  34 gagggttcaattaaatccctcactggtggaccacaaagaaat-acggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatctac 131  Q
    ||||| |||||||| |||||||| |||||||||| ||||||| || |||| ||||| |||||| ||||||||| ||| |||||||||||||||||||||     
T  27255036 gagggatcaattaagtccctcaccggtggaccacgaagaaattacagttgaatttaatcaatggatcatatttattgcaaacaaaattaagaacatctat 27255135  T
Q  132 atgtttccacatacaa 147  Q
    || ||||| |||||||    
T  27255136 atctttccgcatacaa 27255151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 42664040 - 42663998
Alignment:
Q  24 attttagagtgagggttcaattaaatccctcactggtggacca 66  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  42664040 attttagggtgagggttcaattaagtccctcactggtggacca 42663998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 4095923 - 4095874
Alignment:
Q  18 agatggattttagagtgagggttcaattaaatccctcactggtggaccac 67  Q
    ||||||||||||| |||||||| |||||||||||||||| | ||||||||    
T  4095923 agatggattttagggtgagggtccaattaaatccctcaccgatggaccac 4095874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 24565575 - 24565620
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggacca 66  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||    
T  24565575 tggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 24606611 - 24606656
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggacca 66  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||    
T  24606611 tggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 23258016 - 23257973
Alignment:
Q  18 agatggattttagagtgagggttcaattaaatccctcactggtg 61  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||    
T  23258016 agatggattttagggtgagggatcaattaaatctctcactggtg 23257973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 2655731 - 2655773
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtgga 63  Q
    |||||||||  ||||||||||||||||||||||||||| ||||    
T  2655731 tggattttaaggtgagggttcaattaaatccctcactgatgga 2655773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 34595980 - 34595934
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggaccac 67  Q
    |||||| |||||||||||||||| |||||||||||| |||| |||||    
T  34595980 tggattctagagtgagggttcaactaaatccctcaccggtgtaccac 34595934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 44296873 - 44296910
Alignment:
Q  32 gtgagggttcaattaaatccctcactggtggaccacaa 69  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  44296873 gtgagggtccaattaagtccctcactggtggaccacaa 44296910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 4716919 - 4716851
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggaccac-aaagaaatacggttggattta 88  Q
    |||||| ||| |||||||| ||||||||| | ||||||||||||||| || ||||| | ||||||||||    
T  4716919 tggattctagggtgagggtccaattaaattcttcactggtggaccacgaatgaaatgcagttggattta 4716851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 36611540 - 36611495
Alignment:
Q  21 tggattttagagtgagggttcaattaaatccctcactggtggacca 66  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||    
T  36611540 tggattctagggtgagggttcaattaaatctctcaccggtggacca 36611495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 41965108 - 41965160
Alignment:
Q  15 cacagatggattttagagtgagggttcaattaaatccctcactggtggaccac 67  Q
    ||||| |||||| ||| |||||||| ||||||| ||||||| |||||||||||    
T  41965108 cacaggtggattctagggtgagggtccaattaagtccctcattggtggaccac 41965160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University