View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13744_low_15 (Length: 258)

Name: NF13744_low_15
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13744_low_15
NF13744_low_15
[»] chr3 (4 HSPs)
chr3 (115-177)||(24734018-24734080)
chr3 (17-66)||(53343106-53343155)
chr3 (22-66)||(45781551-45781595)
chr3 (30-66)||(52717724-52717760)
[»] chr4 (1 HSPs)
chr4 (22-65)||(21838252-21838295)
[»] chr5 (1 HSPs)
chr5 (17-66)||(38558947-38558996)
[»] chr8 (1 HSPs)
chr8 (22-66)||(40600660-40600704)
[»] chr7 (1 HSPs)
chr7 (22-66)||(22297899-22297943)
[»] chr2 (1 HSPs)
chr2 (22-66)||(1522396-1522440)


Alignment Details
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 24734080 - 24734018
Alignment:
Q  115 taaagcatcacagttttgttcgaaagtttcacaacacttcctacgtcacatattttccatcag 177  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  24734080 taaagcatcacagttttgttcgaaagttggacaacactttctacgtcacatattttccatcag 24734018  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 53343155 - 53343106
Alignment:
Q  17 aggtagtccaccgatgaaccatttacttgatggttcatcctagaatccac 66  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  53343155 aggtggtccaccgatgaaccacttatttgatggttcatcctagaatccac 53343106  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 45781595 - 45781551
Alignment:
Q  22 gtccaccgatgaaccatttacttgatggttcatcctagaatccac 66  Q
    |||||||| ||||||||||  ||||||||||| ||||||||||||    
T  45781595 gtccaccggtgaaccatttgtttgatggttcaccctagaatccac 45781551  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 52717724 - 52717760
Alignment:
Q  30 atgaaccatttacttgatggttcatcctagaatccac 66  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  52717724 atgaaccatttagttgatggttcaccctagaatccac 52717760  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 21838252 - 21838295
Alignment:
Q  22 gtccaccgatgaaccatttacttgatggttcatcctagaatcca 65  Q
    |||||||||||||||| ||| |||||||||||||||||||||||    
T  21838252 gtccaccgatgaaccacttaattgatggttcatcctagaatcca 21838295  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 38558996 - 38558947
Alignment:
Q  17 aggtagtccaccgatgaaccatttacttgatggttcatcctagaatccac 66  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||||    
T  38558996 aggtggtccaccgatgaaccacttatttaatggttcatcctagaatccac 38558947  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 40600660 - 40600704
Alignment:
Q  22 gtccaccgatgaaccatttacttgatggttcatcctagaatccac 66  Q
    |||||||||||||||| ||| |||||||||||||||| |||||||    
T  40600660 gtccaccgatgaaccacttatttgatggttcatcctaaaatccac 40600704  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 22297899 - 22297943
Alignment:
Q  22 gtccaccgatgaaccatttacttgatggttcatcctagaatccac 66  Q
    |||||||||||||||| ||| |||||||||||  |||||||||||    
T  22297899 gtccaccgatgaaccacttaattgatggttcactctagaatccac 22297943  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 1522396 - 1522440
Alignment:
Q  22 gtccaccgatgaaccatttacttgatggttcatcctagaatccac 66  Q
    |||||||| ||||||| ||  ||||||||||||||||||||||||    
T  1522396 gtccaccggtgaaccacttgtttgatggttcatcctagaatccac 1522440  T

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