View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_17 (Length: 210)
Name: NF13744_low_17
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 32926107 - 32926285
Alignment:
| Q |
16 |
aataagcataccagtaagtttctcgacnnnnnnnngttgtaaattatcctattttatctgcaggaataggttatggttgcaattggtgctccctaaatac |
115 |
Q |
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| T |
32926107 |
aataagcataccagtaagtttttcgacttttttttgttgtaaattatcctattttatctgcaggaataggttatggttgcaattggtgctccctaaatac |
32926206 |
T |
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| Q |
116 |
cgataattcttggtaattaacttgtgtagcactgacgctacaaattgaaggagtgtctaattttcaacatgtatcagtg |
194 |
Q |
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| T |
32926207 |
cgataattcttggtaattaacttgtgtagcactgacactacaaattgaaggagtgtctaattttcaacatgcatcagtg |
32926285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 32920887 - 32920972
Alignment:
| Q |
52 |
ttgtaaattatcctattttatctgc---aggaataggttatggttgcaattggtgctccctaaataccgataattcttggtaatta |
134 |
Q |
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| T |
32920887 |
ttgtaagttttcctagtttatctgctgtaggaataggttacaattgcaattgatgctccctaaataccgataattcttgataatta |
32920972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 32931784 - 32931870
Alignment:
| Q |
51 |
gttgtaaattatcctattttatctgc---aggaataggttatggttgcaattggtgctccctaaataccgataattcttggtaatta |
134 |
Q |
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|||||||||| ||||| |||| |||| |||||||| ||| ||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
32931784 |
gttgtaaattgtcctaatttaactgctgtaggaatagcttacaattgtaattgatgctccctaaataccgataattcttgataatta |
32931870 |
T |
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