View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_18 (Length: 203)
Name: NF13744_low_18
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 12514593 - 12514432
Alignment:
| Q |
26 |
atgaagtgaaacctgcatttggttcttaccaaaactttcatttgggacgtgttaacgaataaaaataatagttaaaaacactactcttcaaattataggc |
125 |
Q |
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| T |
12514593 |
atgaagtgaaacctgcatttagttcttaccaaaactttcatttgggacgtgttaacgaataaaagtaatagttaaaaacactactcttcaaattataggc |
12514494 |
T |
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| Q |
126 |
atatactccttaaaagtacaattttaaagnnnnnnntcagaacaaagaactgtctgtccaat |
187 |
Q |
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| T |
12514493 |
atatactccttaaaagtataattttaaagaaaaaaatcagaacaaagaactgtctgttcaat |
12514432 |
T |
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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 32284022 - 32283899
Alignment:
| Q |
37 |
cctgcatttggttcttaccaaaactttc--atttgggacgtgt----taacgaataaaaataatagttaaaaacactactcttcaaattataggcatata |
130 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
32284022 |
cctgcatttggttcttaccaaaactttctcatttgggacgtgtacgttaacgaataaaagtaattgttaaaaacactactcttcaaattataggcatata |
32283923 |
T |
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| Q |
131 |
ctccttaaaagtacaattttaaag |
154 |
Q |
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| T |
32283922 |
ctccttaaaagtacaattttaaag |
32283899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 15703257 - 15703134
Alignment:
| Q |
37 |
cctgcatttggttcttaccaaaactttc--atttgggacgtgt----taacgaataaaaataatagttaaaaacactactcttcaaattataggcatata |
130 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
15703257 |
cctgcatttggttcttaccaaaactttctcatttgggacgtgtacgttaacgaataaaagtaattgttaaaaacactactcttcaaattataggcatata |
15703158 |
T |
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| Q |
131 |
ctccttaaaagtacaattttaaag |
154 |
Q |
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| T |
15703157 |
ctccttaaaagtacaattttaaag |
15703134 |
T |
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