View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_4 (Length: 534)
Name: NF13744_low_4
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Complemental strand, 48664095 - 48663585
Alignment:
| Q |
11 |
cagagagaaaccacaaaatttctgaaatatcaaattcaaataccaggaaatacaccagcaaagccatctgccttttcaatgagctcgtctactgggagag |
110 |
Q |
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| T |
48664095 |
cagagagaaaccacaaaatttctgaaatatcaaattcaaataccaggaaatacaccagcaaagccatctgccttttcaatgagctcgtctactgggagag |
48663996 |
T |
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| Q |
111 |
cttcattctcatctttgtcgcgacccaacaaagatgaagaagggtacatatttgtccccatgccaagtcttctgcccgtctcctttgcaatagccaactg |
210 |
Q |
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| T |
48663995 |
cttcattctcatctttgtcgcgacccaacaaagatgaagaagggtacatatttgtccccatgccaagtcttctgcccgtctcctttgcaatagccaactg |
48663896 |
T |
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| Q |
211 |
atcccctgcattgacatgtaaactgcctcatctgacttcaccatttcaaatgtgcaagtgcatatnnnnnnnttagttgacattagaaaatatttaacca |
310 |
Q |
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| T |
48663895 |
atcccctgcattgacatgtaaactgcctcatctgacttcaccatttcaaatgtgcaagtgcatataacaaaattagttgacattataaaatatttaacca |
48663796 |
T |
|
| Q |
311 |
tcttattagaaaatatttaaacttgagttagattggaacatggcattggcatgacttaatatatccgcagaagcacacaattctctgtaaaagtaacaaa |
410 |
Q |
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| T |
48663795 |
tcttattagaaaatatttaaacttgagttagattggaacatggcattggcatgacttaatatatccgcagaagcacacaattctctgtaaaagtaacaaa |
48663696 |
T |
|
| Q |
411 |
tgactaaactatagtcttctattctatccttagaatatcattattacctgtaatcatcttaacacaaacaccaaggttaagtgctcttcggatggtctcg |
510 |
Q |
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| T |
48663695 |
tgactaaactatagtcttctattctatcattagaatatcattattacctgtaatcatcttaacacaaacaccaaggttaagtgctcttcggatggtctcg |
48663596 |
T |
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| Q |
511 |
gcactatcatg |
521 |
Q |
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| T |
48663595 |
gcactatcatg |
48663585 |
T |
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Back To:
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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 521
Target Start/End: Original strand, 1497433 - 1497500
Alignment:
| Q |
454 |
ttacctgtaatcatcttaacacaaacaccaaggttaagtgctcttcggatggtctcggcactatcatg |
521 |
Q |
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| T |
1497433 |
ttaccagtaatcatcttaacattcacaccaaggttaagtgctcttctaattgtttcagcactatcatg |
1497500 |
T |
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