View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_5 (Length: 493)
Name: NF13744_low_5
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 38732843 - 38733324
Alignment:
| Q |
19 |
aacgtactcacattaattagtaaattgtaaataagagttgaaaattcaaggttggaatgcaaactgttcaattttatttcgactcctccaattggtgtat |
118 |
Q |
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| T |
38732843 |
aacgttctcacattaattagtaaattgtaaataagagttgaaaattcaaggttggaatgcaaactgttcaattttatttcgactcctccaattggtgtat |
38732942 |
T |
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| Q |
119 |
gtgtaattacgtgaatgcaataatctatatcctaagtttgatgagcctagctaaaccaagcattatgcttttctatttgcggatttaatccaaatatttt |
218 |
Q |
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| T |
38732943 |
gtgtaattacgtgaatgcaataatctatatcctaagtttgatgagcctagctaaaccaagcattaggcttttctatttgcggatttaatccaaatatttt |
38733042 |
T |
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| Q |
219 |
tgcagtacttatattactcaaattagtaattgttgcaaataatgtggttttcaaaatatgagcaacga-------tataacataggtggctattaaacca |
311 |
Q |
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| T |
38733043 |
tgcagtacttatattactcaaattagtaattgttgcaaataatgtggttttcaaaatatgagcaacgatataaattataacataggtggctattaaacca |
38733142 |
T |
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| Q |
312 |
aaatggtataaagtaaggctataaaaataggggttgtgatgaattataatgcattttttgcctgtcaaacttcaataatgattatgtgtacctttgtttg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38733143 |
aaatggtataaagtaaggctataaaaataggggttgtgatgaattataatgcattttttgcctgtcaaacttcaataatgattatgtgtacctttgtttg |
38733242 |
T |
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| Q |
412 |
aattatgagttgtccttcatcttcccacttctcaaagggagatcttttttctctaacaaaaccacacgcttaatttaacttt |
493 |
Q |
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| T |
38733243 |
aattatgagttgtccttcatcttcccacttctcaaagggagatcttttttctctaacaaaaccacacgcttaatttaacttt |
38733324 |
T |
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