View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13744_low_7 (Length: 457)
Name: NF13744_low_7
Description: NF13744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13744_low_7 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 17334 - 17617
Alignment:
| Q |
1 |
aatggaccatcctttttgcctatggtacttaggtgtgatgggaagcttcttgtggttttctttaaacagaataaattattggatgtcaacaggatagact |
100 |
Q |
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| T |
17334 |
aatggaccatcctttttgcctatggtacttagttgtgatgggaagcttcttgtggttttctttaaacagaataaattattggatgtcaacaggatagact |
17433 |
T |
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| Q |
101 |
tctcaacgatgagttatgtcatgctataaactttgtgtgaccttgcattgttttgctcacaaacactaatgccatgcactgaaaaaatccaggcaagtgg |
200 |
Q |
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| T |
17434 |
tttcaacgatgagttatgtcaagctataaactttgtgtgaccttgcattgtttttctcac-aacacaaatgccatgcgctgaaaaaaaccatgcaagtgg |
17532 |
T |
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| Q |
201 |
ggatatgaaagagactatgtgtactatattaatactatacatacagaatgtgtaagtgttttcatggagtaataattaaatgatga |
286 |
Q |
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| T |
17533 |
ggatatg-aagagactatgtgtactatattaatactatacatacagaatgtgtaagtgttttcatggagtaataattaaatgatga |
17617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 16015 - 15570
Alignment:
| Q |
1 |
aatggaccatcctttttgcctatggtacttaggtgtgatgggaagcttcttgtggttttctttaaacagaataaattattggatgtcaacaggatagact |
100 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||| |
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| T |
16015 |
aatggaccatcctttttgcctaat-tacttagttgtgatgggaagcttcttgtggttttctttaaacaaaataaattattggatgtctatatgatagact |
15917 |
T |
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| Q |
101 |
tctcaacgatgagttatgtcatgctataaactttgtgtgaccttgcattgttttgctcacaaacactaatgccatgcactgaaaaaatccaggcaagtgg |
200 |
Q |
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| T |
15916 |
tctcaacgatgagttatgtcaagctagaaactttgggtgaccttgcattgtttttatcac-aacacaaatgcaatgtgctg-agcaatccaggcaagtgg |
15819 |
T |
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| Q |
201 |
ggatatgaaagagactatgtgtactatattaatactatacatacagaatgtgtaagtgttttcatggagtaataattaaatgatgaaatgcattgttcct |
300 |
Q |
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| T |
15818 |
cgatataaaagaaaatgtgtgtactgtattaataatgtacatgcaaaatgtg-aagtgtattcatggagtagtaattaaataaggaaatgcat-----ct |
15725 |
T |
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| Q |
301 |
gctcatagttgtcgacttccgcatagatcacaactttattggctggaatggtgtgttcaaaatcaacacgatgaagttgattattctctggttcaataat |
400 |
Q |
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| T |
15724 |
gtttatatttttcgacttccccat-gatcacaactttattggctagattggtgttatcaaaatcaacaagacgaagttgattattctttggttcaataat |
15626 |
T |
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| Q |
401 |
atgctaatttagcac----catgcagcttgttactctcttatttttgagatcttgtt |
453 |
Q |
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| T |
15625 |
atgctaatttagcaccatgcatgcagcttgttactctcttatgtttga-atcttgtt |
15570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 274 - 453
Target Start/End: Original strand, 17755 - 17938
Alignment:
| Q |
274 |
aattaaatgatgaaatgcattgttcctgctcatagttgtcgacttccgcatagatcacaactttattggctggaatggtgtgttcaaaatcaacacgatg |
373 |
Q |
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| T |
17755 |
aattaaatgatgaaatgcattgttcctgctcatagttgtcgacttccgcatagatcacaactttattggccggaatggtgtgttcaaaatcgatacgatg |
17854 |
T |
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| Q |
374 |
aagttgattattctctggttcaataatatgctaatttagcac----catgcagcttgttactctcttatttttgagatcttgtt |
453 |
Q |
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| T |
17855 |
aagttgattattctctggttcaataatatgctaatttagcaccatgcatgcagcttgttactctcttatttttgagatcttgtt |
17938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 48949774 - 48949834
Alignment:
| Q |
283 |
atgaaatgcattgttcctgctcatagttgtcgacttccgcatagatcacaactttattggc |
343 |
Q |
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| T |
48949774 |
atgaaatgcattgttcctgctcatagttgtcgacttccgcatagatcacaactttattggc |
48949834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 234
Target Start/End: Complemental strand, 25865800 - 25865597
Alignment:
| Q |
28 |
cttaggtgtgatgggaagcttcttgtggttttctttaaacagaataaattattggatgtcaacaggatagacttctcaacgatgagttatgtcatgctat |
127 |
Q |
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||||| |||||||||||||||||| | |||| ||||| || ||| |||||||||||| || | || |||||||| | |||||||||||||| || |||| |
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| T |
25865800 |
cttagttgtgatgggaagcttcttattgtttactttacaccgaagaaattattggatttctatagaatagacttgttaacgatgagttatgccaagctag |
25865701 |
T |
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| Q |
128 |
aaactttgtgtgaccttgcattgttttgctcacaaacactaatgccatgcactgaaaaaatccaggcaagtggggatatgaaagagactatgtgtactat |
227 |
Q |
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|||||||| |||||||||||||||||| |||| | ||| ||||| ||||| || | || || | ||||| |||||||||||| || ||||||| ||| |
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| T |
25865700 |
aaactttgggtgaccttgcattgttttattcac-atcacaaatgctatgcattg--agaacccggacaagttgggatatgaaagcaaccatgtgtattat |
25865604 |
T |
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| Q |
228 |
attaata |
234 |
Q |
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| T |
25865603 |
attaata |
25865597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 17247984 - 17248039
Alignment:
| Q |
365 |
aacacgatgaagttgattattctctggttcaataatatgctaatttagcaccatgc |
420 |
Q |
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| T |
17247984 |
aacacgatgaagttgattattctttggttcaataatcggctaatttggcaccatgc |
17248039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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