View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13745_high_3 (Length: 381)
Name: NF13745_high_3
Description: NF13745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13745_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 38987569 - 38987357
Alignment:
| Q |
18 |
ctaataacactctgtttccgttaaaaagtcaccgataactatttatggtaaataaattaacatattatccatataattaggacagcagtcaacagattnn |
117 |
Q |
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| T |
38987569 |
ctaataacactctgtttccgttaaaaagtcaccgataactatttatggtaaataaattaacatattatccatataattaggacagcagtcaacagattaa |
38987470 |
T |
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| Q |
118 |
nnnnnttcgaagattcttgcaaaaggtggcaacagtgctgcatgatcaattcnnnnnnnaattatatat---aaggaaaatataatctgtactttgatgt |
214 |
Q |
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| T |
38987469 |
aaaaattctaagattcttgcaaaaggtggcaacagtgctgcatgatcaattctttttttaattatatataagaaggaaaatataatctgtactttgatgt |
38987370 |
T |
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| Q |
215 |
acattaacttacg |
227 |
Q |
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| T |
38987369 |
acattaacttacg |
38987357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 38987245 - 38987217
Alignment:
| Q |
347 |
tctaagtcgatatgaaatacctatgcttc |
375 |
Q |
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| T |
38987245 |
tctaagtcgatatgaaatacctatgcttc |
38987217 |
T |
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