View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13745_low_6 (Length: 303)
Name: NF13745_low_6
Description: NF13745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13745_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 24157602 - 24157327
Alignment:
| Q |
11 |
gagagggagattatggaagaatggtgtgttaggtaacttaccagagaaggcattgaaggaaacatttaaggaaacaagattttgaaggtcagatagagga |
110 |
Q |
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| T |
24157602 |
gagagggagattatggaagaatggtgtgttaggtaacttaccagagaaggcattgaaggaaacatttaaggaaacaagattttgaaggtcagatagagga |
24157503 |
T |
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| Q |
111 |
tctaaattccctgagagtttgttatgtgagagatcaagcacacttagtttgctaagactagagaattgtgatggaatttcaccagagaaatggttgaagc |
210 |
Q |
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| T |
24157502 |
tctaaattccctgagagtttgttatgtgagagatcaagcacacttagtttgctaagactagagaattgtgatggaatttcaccagagaaatggttgaagc |
24157403 |
T |
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| Q |
211 |
tgagattaagagagatttctagtgaaggaattagactcaattcctttggaatttctcctgtgaaactattgcttcc |
286 |
Q |
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| T |
24157402 |
tgagattaagagagatttctagtgaaggaattagactcaattcctttggaatttctcctgtgaaactattgcttcc |
24157327 |
T |
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Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 42215808 - 42215648
Alignment:
| Q |
27 |
aagaatggtgtgttaggtaacttaccagagaaggcattgaaggaaacatttaaggaaacaagattttgaaggtcagatagaggatctaaattccctgaga |
126 |
Q |
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|||||||||| |||||| || | ||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||| | || ||||||||||||||||| |
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| T |
42215808 |
aagaatggtgagttaggcaattcaccagagaattcattgaaggaaacatttaaagaaacaagattatgaaggttagaaatagcatctaaattccctgaga |
42215709 |
T |
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| Q |
127 |
gtttgttatgtgagagatcaagcacacttagtttgctaagactagagaattgtgatggaat |
187 |
Q |
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| T |
42215708 |
gcttgttgtgggagagatcaagcactccaagtttgctaagaccagagaactgagatggaat |
42215648 |
T |
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