View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13745_low_9 (Length: 238)
Name: NF13745_low_9
Description: NF13745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13745_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 30942335 - 30942109
Alignment:
| Q |
12 |
tcaaaattaaccattaccatagacaaaggaatattcaagaaaattgaatattactagagctggattcttcacttcccttgctttgacttgtgcttttctt |
111 |
Q |
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| T |
30942335 |
tcaaaattaaccattaccatagacaaaggaatattcaagaaaattgaatattactggagctggattcttcacttcccttgctttgacttgtgcttttctt |
30942236 |
T |
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| Q |
112 |
tttcttcttataaggtaaacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtatcagga |
211 |
Q |
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| T |
30942235 |
tttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtatcagga |
30942136 |
T |
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| Q |
212 |
gacccaccattttcttcataagcagcc |
238 |
Q |
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| T |
30942135 |
gacccaccattttcttcataagcagcc |
30942109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 237
Target Start/End: Original strand, 32002006 - 32002136
Alignment:
| Q |
107 |
ttctttttcttcttataaggtaaacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtat |
206 |
Q |
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| T |
32002006 |
ttctttttcttcttgtaaggaattcctctagccttagcttgagaatctctcacctcacgaagatagattcttatggaaccactagcaaaaggattagttt |
32002105 |
T |
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| Q |
207 |
caggagacccaccattttcttcataagcagc |
237 |
Q |
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| T |
32002106 |
caggtaatccaccattttcttcataagcagc |
32002136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 238
Target Start/End: Complemental strand, 39556759 - 39556620
Alignment:
| Q |
99 |
ttgtgcttttctttttcttcttataaggtaaacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaagg |
198 |
Q |
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| T |
39556759 |
ttgtgctcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaagg |
39556660 |
T |
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| Q |
199 |
attagtatcaggagacccaccattttcttcataagcagcc |
238 |
Q |
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| T |
39556659 |
attagtctctggagttccgccgttttcctcataagcagcc |
39556620 |
T |
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