View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13746_high_1 (Length: 580)
Name: NF13746_high_1
Description: NF13746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13746_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11079958 - 11080162
Alignment:
| Q |
1 |
tagattatacttcatttcattttttccacatacaagtacaaatatttgtcaatcttcatttagagaaccactctcgactaatattatacaaaaaattcaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11079958 |
tagattacacttcatttcattttttccacatacaagtacaaatatttgtcaatcttcatttagagaaccactctcgactaatattatacaaaaaattcaa |
11080057 |
T |
|
| Q |
101 |
agattatatccttaattcatgtcatttgaacgttgcatgtaagccgcaactgtctttgtctcttaaaatggatgacctacaaccaggaaacttaactcca |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11080058 |
agattatatcc----ttcatgtcatttgaacgttgcatgtaagtcgcaactgtctttgtctctaaaaatggatgacctacaaccaggaaacttaactcca |
11080153 |
T |
|
| Q |
201 |
tctcaacaa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
11080154 |
tctcaacaa |
11080162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 410 - 565
Target Start/End: Original strand, 11080380 - 11080534
Alignment:
| Q |
410 |
atgttgcaatcacaataacgtttatggaccatttcgaagaactttgttcttggtttagccagcaacaacattcatcatcttattatacaacaatggataa |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11080380 |
atgttgcaatcacaataacgtttatggaccattttgaagag-tttgttcttggtttagccagcaacaacattcatcatcttattatacaacaatggataa |
11080478 |
T |
|
| Q |
510 |
aaaataagccttacacaattatgcacgtaatccattacactacttgtactcttttt |
565 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
11080479 |
aaaataagacttacacaattatgtacttaatccattacactacttgtactcttttt |
11080534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 214 - 337
Target Start/End: Original strand, 11080260 - 11080383
Alignment:
| Q |
214 |
aactccaagaatagcaacatctcaccttccactccatctacactgcaccaccgatcgaacaaacctcacccaagtgaaaataacctttggtaccggcttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11080260 |
aactccaagaatagcaacatctcaccttccactccatctacactgcaccaccgatcaaacaaacctcacccaagtgaaaataacctttggtaccggcttt |
11080359 |
T |
|
| Q |
314 |
gaatgtttctttccaaaataatgt |
337 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11080360 |
gaatgtttctttccaaaataatgt |
11080383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 4157047 - 4156944
Alignment:
| Q |
6 |
tatacttcatttcattttttccacatacaagtacaaatatttgt-----caatcttcatttagagaaccactctcgactaatattatacaaaaaattcaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||| || |||| ||||||||||||| | || || |||||||||||||| ||||| |
|
|
| T |
4157047 |
tatacttcatttcgttttttccacatacaagtataaatatttgtattgtcattcttgatttagagaaccaatttcaacagatattatacaaaaagttcaa |
4156948 |
T |
|
| Q |
101 |
agat |
104 |
Q |
| |
|
|||| |
|
|
| T |
4156947 |
agat |
4156944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University