View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13746_high_4 (Length: 317)
Name: NF13746_high_4
Description: NF13746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13746_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 3688983 - 3689109
Alignment:
| Q |
180 |
aagtttatgatattctacagagtttgaatgattgtaaccaagggaaaaggctatag------atatatatatttaattagatcaggtaatcaaaatgata |
273 |
Q |
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| T |
3688983 |
aagtttatgatattctacagagtttgaatgattgtaaccaagggaaaaggctatagatatgtatatatatatttaatttgatcaggtaatcaaaatgata |
3689082 |
T |
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| Q |
274 |
ataaggatgatggtatagttcataact |
300 |
Q |
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| T |
3689083 |
ataaggatgatggtatagttcataact |
3689109 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 3688933 - 3688983
Alignment:
| Q |
42 |
aaatataaaaaccaaattatgacattttcttggtatttgtttgattgttga |
92 |
Q |
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| T |
3688933 |
aaatataaaaatcaaattatgacattttcttggtatttgtttgtttgttga |
3688983 |
T |
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