View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13746_low_2 (Length: 525)
Name: NF13746_low_2
Description: NF13746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13746_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 75 - 514
Target Start/End: Original strand, 36458064 - 36458485
Alignment:
| Q |
75 |
ttattttgaattagagcttgctataaattatttctatcacctaggaggagtatgccattggttggataataggctttcactttatgtggctctctatttc |
174 |
Q |
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| T |
36458064 |
ttatttcgacttagagctt-ctacaaattacttgtatcacctaggaggagcatgccattggttggataataggctttcactttatgtggctctctatttc |
36458162 |
T |
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| Q |
175 |
attcaagtttctaattcatgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
274 |
Q |
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| T |
36458163 |
a-----------------tgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
36458245 |
T |
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| Q |
275 |
ttttacaattttctttttctaatcctaaactgtcacttctaaaccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
374 |
Q |
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| T |
36458246 |
ttttacaattttctttttctaatcctaaactgtcacttctaacccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
36458345 |
T |
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| Q |
375 |
atcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaacacgttcca |
474 |
Q |
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| T |
36458346 |
atcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccgaccgcccggctgaccttgagtttagtggcaacacgttcca |
36458445 |
T |
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| Q |
475 |
gaccaccatataagttgcagaatttgatcatatacttcat |
514 |
Q |
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| T |
36458446 |
gaccaccatataagttgcagaatttgatcatatacttcat |
36458485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 36457873 - 36457924
Alignment:
| Q |
23 |
gaacattgtgtattggggttgagtacctcatgtactcatttgcatcttattt |
74 |
Q |
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| T |
36457873 |
gaacattgtgtattggggttgagtaccttatgtactcatatgcatcttattt |
36457924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 433
Target Start/End: Original strand, 40874742 - 40874816
Alignment:
| Q |
359 |
aaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
433 |
Q |
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| T |
40874742 |
aaaataagtatccatcattttcttaaatgcatgccacgtcaacaaactatctgatccagcttgatgagactttcc |
40874816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 433
Target Start/End: Original strand, 40871658 - 40871718
Alignment:
| Q |
373 |
tcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
433 |
Q |
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| T |
40871658 |
tcattttcttaaatgcatgccatgtcaacaaactatctgatccagcttgatgcgactttcc |
40871718 |
T |
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