View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13746_low_3 (Length: 498)
Name: NF13746_low_3
Description: NF13746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13746_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 42662988 - 42662519
Alignment:
| Q |
19 |
ataccaagtgacagtgagaagtcaattttggaacttcatgatctaccaggaggagccaaagcctttctccttattgctaggttctgttatggtgtcaaaa |
118 |
Q |
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| T |
42662988 |
ataccaagtgacagtgagaagtcaattttggaacttcatgatctaccaggaggagccaaagcctttctccttattgctaggttctgttatggtgtcaaaa |
42662889 |
T |
|
| Q |
119 |
tggaactaactccatcaaatgtagttcctctaagatgtgcagctgagtttctacaaatgagtgaggattatggagaaggaaacctaatgatacaaactga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42662888 |
tggaactaactccatcaaatgtagttcctctaagatgtgcagctgagtttctacaaatgagtgaagattatggagaaggaaacctaatgatacaaactga |
42662789 |
T |
|
| Q |
219 |
aaatttccttaaccacatatttggtcaatggacagacacactcaaggcactcaaaacatgtgaagaggttttacctttagctgaagagcttcacataact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42662788 |
aaatttccttaaccacatatttggtcaatggacagacacactcaaggcactcaaaacatgtgaagatgttttacctttagctgaagagcttcacataact |
42662689 |
T |
|
| Q |
319 |
tcaagatgtatacattctttagttttgaaagctgcagatccaactttggctatattacctctctctggtccaagttctgttcaaagtccagataattcag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662688 |
tcaagatgtatacattctttagttttgaaagctgcagatccaactttggctatcttacctctctctggtccaagttctgttcaaagtccagataattcag |
42662589 |
T |
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| Q |
419 |
aaatgtggaatggaatatccatgagcctaacatcaaaggaaactggtgaagattggtggtttgatgatgt |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662588 |
aaatgtggaatggaatatccatgagcctaacatcaaaggaaactggtgaagattggtggtttgatgatgt |
42662519 |
T |
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