View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13746_low_5 (Length: 343)
Name: NF13746_low_5
Description: NF13746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13746_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 44837125 - 44837441
Alignment:
| Q |
10 |
catcatcaaactctttactcaccaattcagcttggtaaacacatgcctcactaaacctagtttccaccattctataccttgcaaagaatcttctccaaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837125 |
catcatcaaactctttactcaccaattcagcttggtaaacacatgcctcactaaacctagtttccaccattctataccttgcaaagaatcttctccaaac |
44837224 |
T |
|
| Q |
110 |
atcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttcttatccctgcagatagtattccttctgttatcattctacactca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837225 |
atcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttcttaaccctacagatagtattccttctgttatcattctacactca |
44837324 |
T |
|
| Q |
210 |
tcctcctcgctcatacatgtttcagccatatcgaaaaaagccgagtagaagaacaacgcttcaacgaatcggttcacaaaagactgcgaattaagacttg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44837325 |
tcctcctcgctcatacatgtttcagccatatcgaaaaaagccgagtagaagaacaacgcttcaacgaatcggttcacaaaagactgcgaattaagacttg |
44837424 |
T |
|
| Q |
310 |
cttcagtttcaagtact |
326 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
44837425 |
cttcagtttcaagtact |
44837441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 38926662 - 38926804
Alignment:
| Q |
68 |
agtttccaccattctataccttgcaaagaatcttctccaaacatcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttctt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| | |||| | ||||||| |||||| |
|
|
| T |
38926662 |
agtttccaccattctataccttgcaaagaaccttctccaaacatcaatcttcacattcctaaccttcctttcttcatcttccaaaccaacaatgtttctt |
38926761 |
T |
|
| Q |
168 |
atccctgcagatagtattccttctgttatcattctacactcat |
210 |
Q |
| |
|
|||||| |||||| |||| |||| | || | ||||||||||| |
|
|
| T |
38926762 |
atcccttcagataatattgcttccatcattactctacactcat |
38926804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University