View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13747_high_1 (Length: 1042)

Name: NF13747_high_1
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13747_high_1
NF13747_high_1
[»] chr4 (8 HSPs)
chr4 (374-1026)||(5921598-5922250)
chr4 (454-736)||(5935353-5935635)
chr4 (454-733)||(5531858-5532137)
chr4 (832-1025)||(5935059-5935252)
chr4 (842-1006)||(5532251-5532415)
chr4 (19-191)||(5922321-5922481)
chr4 (466-707)||(38178308-38178549)
chr4 (906-1026)||(38177382-38177502)
[»] chr1 (1 HSPs)
chr1 (484-704)||(45453136-45453356)
[»] chr8 (2 HSPs)
chr8 (458-680)||(40917015-40917237)
chr8 (487-683)||(45319637-45319833)
[»] chr3 (2 HSPs)
chr3 (458-702)||(53146696-53146940)
chr3 (842-1024)||(53146396-53146578)
[»] chr7 (2 HSPs)
chr7 (487-702)||(34840086-34840301)
chr7 (906-1000)||(34841384-34841478)


Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 374 - 1026
Target Start/End: Complemental strand, 5922250 - 5921598
Alignment:
Q  374 tttttattatgtaagagggtaaactttggttgttatgtggctgattttgaaatgaacgttgtgtgttttattcttatgtctgtgcaggtttccaagtatg 473  Q
    ||||| |||||||| |||||||| |||| ||| |||||| |||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||    
T  5922250 ttttttttatgtaatagggtaaattttgattggtatgtgtctgattttgaaagggatgtggtgtgttttattcttatgtctgtgcaggtttccaagtatg 5922151  T
Q  474 tcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgtt 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5922150 tcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgtt 5922051  T
Q  574 ttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtatggttcttg 673  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5922050 ttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtatggttcttg 5921951  T
Q  674 ataatgaagccttgtatgatatttgcttccgtactctcaagcttaccaccccgagctgtaagctagtttatacctcatttctaatcactttctttaatcc 773  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921950 ataatgaagccttgtatgatatttgcttccgtactctcaagcttactaccccgagctgtaagctagtttatacctcatttctaatcactttctttaatcc 5921851  T
Q  774 atatctgttttcaagtttgttacatttgttcaaaaaggtttctaattttggtgtttgcttttttgtgatgcagttggtgatcttaaccatttgatatcag 873  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921850 atatctgttttcaagtttgttacatttgttcaaaaaggtttctaattttggtgtttgcttttttgtgatgcagttggtgatcttaaccatttgatatcag 5921751  T
Q  874 caaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttca 973  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921750 caaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttca 5921651  T
Q  974 ctttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtacc 1026  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5921650 ctttttcatgttgggttttgcacctttgacttcaagaggttctcagcagtacc 5921598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 454 - 736
Target Start/End: Complemental strand, 5935635 - 5935353
Alignment:
Q  454 tgtgcaggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacagga 553  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||    
T  5935635 tgtgcaggttttcaagtatgccattcacttggtggaggaactgggtctggaatgggtacccttttgatttcaaagatcagggaagaatacccagatagga 5935536  T
Q  554 tgatgcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgc 653  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||    
T  5935535 tgatgcttactttctctgttttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctaccctatctgttcaccagcttgttgaaaacgc 5935436  T
Q  654 agatgaatgtatggttcttgataatgaagccttgtatgatatttgcttccgtactctcaagcttaccaccccgagctgtaagc 736  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||    
T  5935435 agatgaatgtatggttcttgataatgaagccttgtatgatatttgtttccgtaccctcaagctcacaaccccaagctgtaagc 5935353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 454 - 733
Target Start/End: Original strand, 5531858 - 5532137
Alignment:
Q  454 tgtgcaggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacagga 553  Q
    |||||||| || |||||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5531858 tgtgcaggatttcaagtatgccactcacttggtggaggaactgggtctggaatgggaactcttctgatttcaaagatcagggaagaatacccagacagga 5531957  T
Q  554 tgatgcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgc 653  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||  | ||||||||||||||||||||||| ||    
T  5531958 tgatgcttactttctctgttttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctaccctctctgttcaccagcttgttgaaaatgc 5532057  T
Q  654 agatgaatgtatggttcttgataatgaagccttgtatgatatttgcttccgtactctcaagcttaccaccccgagctgta 733  Q
    ||||||    ||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||| | || ||| |||||||    
T  5532058 agatgaggtcatggttcttgacaatgaagccttgtatgacatttgcttccgcattctgaagctcagcaacccaagctgta 5532137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 832 - 1025
Target Start/End: Complemental strand, 5935252 - 5935059
Alignment:
Q  832 ttttttgtgatgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatct 931  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5935252 ttttttgtgatgcagttggtgatcttaaccatttgatatcagcaactatgtctggtgtcacatgttgtttgaggttccctggtcagctgaactccgatct 5935153  T
Q  932 gaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagtac 1025  Q
     ||||||||||| ||||||||  ||||||||||||| || |||||||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  5935152 taggaagcttgcagtgaatctggttccattccctcgcctccactttttcatgttagggtttgcacctttgacttcaagaggttctcagcagtac 5935059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 842 - 1006
Target Start/End: Original strand, 5532251 - 5532415
Alignment:
Q  842 tgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagctt 941  Q
    ||||||||||||| | || ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  5532251 tgcagttggtgatttgaatcatctgatatcagcaactatgtctggtgtcacctgttgtttgaggttccctggtcagctgaactctgatcttaggaagctt 5532350  T
Q  942 gctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttc 1006  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||| |||||||    
T  5532351 gctgtgaatctcattccattcccgcgtcttcactttttcatggtgggatttgctcctttgacttc 5532415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 5922481 - 5922321
Alignment:
Q  19 atcttttacctgctttgtggctgattgcgcgtttggtgtatgaattttcttcttctgttcaattaaatcaaatgggtgcctttatttgttgtaattgaat 118  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||||||| ||  ||| |||||||||||     |||||||||| ||||||| ||||||||    
T  5922481 atcttttgcctgctttatggctgattgcgcatttggtgcatgaattttttt--tctcttcaattaaat-----gggtgcctttttttgttggaattgaat 5922389  T
Q  119 gacttcttgttgtatgttttgatgttttgcatctgattttgaattgggtgtttgtgtgtgagctttttctcag 191  Q
    |||| |||||||| |||    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5922388 gactgcttgttgt-tgt----atgttttgcatctgattttgaattgggtgtttgtgtgtgagctttttttcag 5922321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 466 - 707
Target Start/End: Complemental strand, 38178549 - 38178308
Alignment:
Q  466 caagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactt 565  Q
    ||||| ||||||||| | || || |||||||| |||||||||||||| ||||| ||||| ||||| |||||||| || || ||  | |||||| | || |    
T  38178549 caagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgt 38178450  T
Q  566 tctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtat 665  Q
    | ||||| || ||||| ||||||||||| || || || || || || ||||| || ||  | ||||| || |||||||||||||| ||||||||||| ||    
T  38178449 tttctgtgtttccttcacctaaggtttcagatacagttgtggagccttacaatgcaaccctttctgtgcatcagcttgttgaaaatgcagatgaatgcat 38178350  T
Q  666 ggttcttgataatgaagccttgtatgatatttgcttccgtac 707  Q
    |||| | || ||||| ||  | ||||||||||||||||||||    
T  38178349 ggttttggacaatgaggcactctatgatatttgcttccgtac 38178308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 906 - 1026
Target Start/End: Complemental strand, 38177502 - 38177382
Alignment:
Q  906 ttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgactt 1005  Q
    |||||||| ||||| ||||| ||||| || ||||||||||| || || || |||||||||||||| || || || ||| | || ||||||||  |||| |    
T  38177502 ttccctgggcagctgaactctgatcttagaaagcttgctgtcaaccttatcccattccctcgtctccatttctttatggttgggtttgcacccttgacat 38177403  T
Q  1006 caagaggttctcagcagtacc 1026  Q
    ||||||| || || |||||||    
T  38177402 caagaggatcccaacagtacc 38177382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 484 - 704
Target Start/End: Complemental strand, 45453356 - 45453136
Alignment:
Q  484 ggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgttttcccttctc 583  Q
    ||||| || ||||| |||||||||||||| ||| | ||||| ||||||||||| |||||||| ||  | |||||||||||||||||||| ||||| ||||    
T  45453356 ggtggtggtactggttctggaatgggaacacttttgatttctaagatcagggaggaataccctgatcgaatgatgcttactttctctgtgttcccatctc 45453257  T
Q  584 ctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtatggttcttgataatgaagc 683  Q
    ||||||| || |||||||| || ||||| ||||| |||||  | ||||| ||||| |||||||| || || |||||||| |||||||| |||||||||||    
T  45453256 ctaaggtatctgacactgttgttgaaccttacaatgctacactctctgtccaccaacttgttgagaatgctgatgaatgcatggttctggataatgaagc 45453157  T
Q  684 cttgtatgatatttgcttccg 704  Q
      | |||||||||||||||||    
T  45453156 tctctatgatatttgcttccg 45453136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 458 - 680
Target Start/End: Complemental strand, 40917237 - 40917015
Alignment:
Q  458 caggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgat 557  Q
    ||||||| ||| | |||||||| || || || ||||||||||| |||||||| ||| | |||||||| |||||||| ||||| || |||||||| |||||    
T  40917237 caggttttcaaatttgtcattcgcttggaggtggaactggatcaggaatgggtaccttgctcatttccaagatcagagaagagtatccagacagaatgat 40917138  T
Q  558 gcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgcagat 657  Q
    | | |||||||| || |||||||| || |||||||| || || ||||| ||||||||||| || ||| | |||||||| || || |||||||| |||||     
T  40917137 gttgactttctcagtgttcccttcaccaaaggtttctgataccgtggtggaaccctacaatgcaactctctctgttcatcaactagttgaaaatgcagac 40917038  T
Q  658 gaatgtatggttcttgataatga 680  Q
    ||||| |||||||||||||||||    
T  40917037 gaatgcatggttcttgataatga 40917015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 487 - 683
Target Start/End: Original strand, 45319637 - 45319833
Alignment:
Q  487 ggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgttttcccttctccta 586  Q
    |||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||| ||  | |||||||| ||||||||||| || || ||||| |    
T  45319637 ggaggaacgggttctggaatgggaactctactcatttcaaagatcagagaagaataccctgatcgaatgatgctcactttctctgtctttccatctccaa 45319736  T
Q  587 aggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtatggttcttgataatgaagc 683  Q
    |||| || ||||| || || || || ||||| || ||  | |||||||||||  | || || || || ||||| |||||||| ||||||||||||||    
T  45319737 aggtgtcagacacagttgttgagccttacaatgcaacactttctgttcaccaattggtggagaatgccgatgagtgtatggtccttgataatgaagc 45319833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 458 - 702
Target Start/End: Complemental strand, 53146940 - 53146696
Alignment:
Q  458 caggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgat 557  Q
    ||||||| ||||| || || || || || ||||| || || ||||| |||||||| ||  | || |||||||| ||||| ||||| |||||||| |||||    
T  53146940 caggttttcaagtttgccactcccttggaggaggcacgggttctggcatgggaacactattgatatcaaagattagggaggaatatccagacagaatgat 53146841  T
Q  558 gcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgcagat 657  Q
    ||||||||||||||||||||| ||||| ||||| || ||||| || || || || ||||| || || |||||||| ||||| || || ||||| ||||||    
T  53146840 gcttactttctctgttttcccatctccaaaggtatctgacacagttgttgagccatacaatgccacattatctgtccaccaactggtagaaaatgcagat 53146741  T
Q  658 gaatgtatggttcttgataatgaagccttgtatgatatttgcttc 702  Q
    || |||||||||||||| ||||||||  | ||||| |||||||||    
T  53146740 gagtgtatggttcttgacaatgaagcactttatgacatttgcttc 53146696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 842 - 1024
Target Start/End: Complemental strand, 53146578 - 53146396
Alignment:
Q  842 tgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagctt 941  Q
    ||||||||| ||||| |||||| |||| || ||||| |||  ||| || || |||||| ||||||| ||||| ||  | ||||| ||||| ||||||||     
T  53146578 tgcagttggggatctgaaccatctgatttccgcaactatgagtggggttacctgttgtctgaggtttcctggacaattgaactctgatctcaggaagctg 53146479  T
Q  942 gctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcagcagta 1024  Q
    ||||| ||||| || |||||||| |||||||||||||| ||| | || ||||||||||| |||||  | || |||||||||||    
T  53146478 gctgtcaatctgatcccattcccacgtcttcacttttttatggttgggtttgcacctctcacttctcgtgggtctcagcagta 53146396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 487 - 702
Target Start/End: Original strand, 34840086 - 34840301
Alignment:
Q  487 ggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgttttcccttctccta 586  Q
    |||||||| |||||||||||||||||  |  | ||||| ||||| || || ||||| || || ||||||||| | || || || || || |||||||| |    
T  34840086 ggaggaacgggatctggaatgggaactttgttgatttcgaagattagagaggaatatcctgataggatgatgttgacgttttcggtgtttccttctccga 34840185  T
Q  587 aggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagcttgttgaaaacgcagatgaatgtatggttcttgataatgaagcctt 686  Q
    ||||||| || ||||| || || || || || |||||| | |||||||| ||| | ||||| || || || || |||||||| ||||||||||| || ||    
T  34840186 aggtttctgatactgttgttgagccttataatgctactctttctgttcatcagttggttgagaatgctgacgagtgtatggtgcttgataatgaggcttt 34840285  T
Q  687 gtatgatatttgcttc 702  Q
    ||| ||||| ||||||    
T  34840286 gtacgatatctgcttc 34840301  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 906 - 1000
Target Start/End: Original strand, 34841384 - 34841478
Alignment:
Q  906 ttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctct 1000  Q
    ||||| ||||| || ||||| |||||  |||| || || ||||||||||| ||||||||||| || ||||| |||||| | |||||||| |||||    
T  34841384 ttcccgggtcaactcaactctgatctccggaaactggcagtgaatctcatcccattccctcgcctgcacttcttcatggttggttttgctcctct 34841478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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