View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13747_high_11 (Length: 223)

Name: NF13747_high_11
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13747_high_11
NF13747_high_11
[»] chr3 (20 HSPs)
chr3 (1-205)||(2748940-2749144)
chr3 (1-205)||(5412831-5413035)
chr3 (1-195)||(2807212-2807406)
chr3 (1-205)||(2759159-2759363)
chr3 (19-205)||(2818520-2818706)
chr3 (7-205)||(2838589-2838787)
chr3 (1-205)||(2855799-2856003)
chr3 (7-205)||(2769020-2769218)
chr3 (19-192)||(2797324-2797497)
chr3 (19-180)||(2790330-2790491)
chr3 (140-201)||(21945673-21945734)
chr3 (125-182)||(22648533-22648590)
chr3 (125-201)||(21930455-21930531)
chr3 (125-201)||(22028034-22028110)
chr3 (125-201)||(22034551-22034627)
chr3 (125-201)||(22179451-22179527)
chr3 (143-201)||(22104775-22104833)
chr3 (143-201)||(22187040-22187098)
chr3 (144-201)||(22052786-22052843)
chr3 (143-183)||(22621288-22621328)
[»] scaffold0691 (1 HSPs)
scaffold0691 (7-205)||(6141-6339)
[»] chr8 (1 HSPs)
chr8 (143-201)||(27294600-27294658)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2748940 - 2749144
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  2748940 agagagagaaaatggaaaatggcatgatcctcgactgtcttctctttttattgaagaaacagaagttgttggtattgaagtcccaaaagaagaactgtct 2749039  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749040 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 2749139  T
Q  201 aaaag 205  Q
    |||||    
T  2749140 aaaag 2749144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5412831 - 5413035
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| || || |||  ||||||||||||||| |||||||||||||||||||||||| |||||    
T  5412831 agagacagaaaatggaagatggcgagatcctcgactgtcttccctattcattacagaaacagaagttgtaggaattgaaggtccaaaagaagaattgtct 5412930  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    ||||||||||||||||||| ||| || || || || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  5412931 ggttggttattggatggtgcagcggaacgtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagcc 5413030  T
Q  201 aaaag 205  Q
    |||||    
T  5413031 aaaag 5413035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 2807212 - 2807406
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||| ||| |||||   |||| ||||||| |||||    
T  2807212 agagacagaaaatggaagatggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaattcccaagagaagaaatgtct 2807311  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttga 195  Q
    | |||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2807312 gtttggttattggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga 2807406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2759159 - 2759363
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||| ||||||| |||||||||||||| | |    
T  2759159 agagaaagaaaatggaagatggcgtgatcctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaaaagaagaactatat 2759258  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    |||||||||||||| |||  |||||| ||||| ||||| || |||||||||||||| || || || ||||||||||||||||||||||||||||| |||     
T  2759259 ggttggttattggagggttcagctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagcc 2759358  T
Q  201 aaaag 205  Q
    |||||    
T  2759359 aaaag 2759363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 2818520 - 2818706
Alignment:
Q  19 atggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttggttattggatggt 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||| ||||||| || | ||||||||| | ||||||||||||||| |||    
T  2818520 atggcgtgatcctcgactgtcttctcttttcattgaagaaacagaaatcgtaggatttgaaggcccgagagaagaactatatggttggttattggagggt 2818619  T
Q  119 gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    | ||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||    
T  2818620 gcagccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaag 2818706  T

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Target: chr3; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 2838787 - 2838589
Alignment:
Q  7 agaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttgg 106  Q
    ||||||||||| |||||  || |||||||||||||| ||||| ||||||||||||||| |||| ||| ||||||| |||| ||||||| | | |||||||    
T  2838787 agaaaatggaagatggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttgg 2838688  T
Q  107 ttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    |||||||| |||| |||||||||||| || ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  2838687 ttattggagggtgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaag 2838589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2856003 - 2855799
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||| |||||    
T  2856003 agagacagaaaatggaagatggcgtgatcctcgactgtcttcccttttcattgaagaaacagaagttgtaggcattgaaggcccaaaagaagaattgtct 2855904  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    |||||||||||||| |||  | |||||||||  ||||| || ||||| |||||||| ||  |||||||||| ||||||||||||||| ||||||| |||     
T  2855903 ggttggttattggaaggtatatctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagcc 2855804  T
Q  201 aaaag 205  Q
    |||||    
T  2855803 aaaag 2855799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 2769020 - 2769218
Alignment:
Q  7 agaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttgg 106  Q
    ||||| ||||| |||||||||||||||  ||||||| || |||||||||||||||||| |||| ||| | ||||| |||| ||||||| | | |||||||    
T  2769020 agaaagtggaagatggcgtgatcctcggatgtcttccctctttattgaagaaacagaaattgtaggattggaaggcccaagagaagaattatttggttgg 2769119  T
Q  107 ttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    |||||||| |||| |||| ||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||| ||| ||| |||||    
T  2769120 ttattggagggtgcagctaagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaag 2769218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 2797324 - 2797497
Alignment:
Q  19 atggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttggttattggatggt 118  Q
    |||| ||||||||||||||||||| ||||||||||||||||| | | |||| ||| ||||||| || |  |||||| |||||||||||||| | || ||     
T  2797324 atggtgtgatcctcgactgtcttccctttttattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttactagagggc 2797423  T
Q  119 gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttt 192  Q
      |||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2797424 acagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagtttt 2797497  T

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Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 2790330 - 2790491
Alignment:
Q  19 atggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttggttattggatggt 118  Q
    ||||| |||||||||  ||||||| ||||| ||||||||||| | | |||| ||| ||||||| || |  |||||| ||||||||||||||||||| ||     
T  2790330 atggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttattggagggc 2790429  T
Q  119 gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgc 180  Q
      |||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||    
T  2790430 acagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc 2790491  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 21945673 - 21945734
Alignment:
Q  140 tccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||  ||||||||| |||||    
T  21945673 tccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaa 21945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 22648590 - 22648533
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgcca 182  Q
    |||||||| || || || |||||||| |||||||| ||||||||||||||||||||||    
T  22648590 gagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgcca 22648533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 21930455 - 21930531
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  21930455 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 21930531  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 22028034 - 22028110
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22028034 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22028110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 22034551 - 22034627
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22034551 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22034627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 22179451 - 22179527
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| ||| |||||| ||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22179451 gagcgcactgtggtattcgtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22179527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 22104775 - 22104833
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22104775 gtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacagcaa 22104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 22187040 - 22187098
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22187040 gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22187098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 22052786 - 22052843
Alignment:
Q  144 tggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22052786 tggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22052843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 22621328 - 22621288
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaa 183  Q
    ||||||||||||||||| | ||||||| |||||||||||||    
T  22621328 gtggtaggaatgggaggacaaggaaaatccactcttgccaa 22621288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 6339 - 6141
Alignment:
Q  7 agaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttgg 106  Q
    ||||||||||| |||||||||||||||| | ||| | ||||||||||||||||| |||||||| ||| | ||||| |||| ||| ||| | | |||||||    
T  6339 agaaaatggaagatggcgtgatcctcgattatctgccctttttattgaagaaactgaagttgtaggattcgaaggcccaagagaggaattatatggttgg 6240  T
Q  107 ttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    ||||||||  ||  |||||||||||| || || || |||||||||||||||||  |||| ||||||||||||||||||||||||||||| ||| |||||    
T  6239 ttattggagagtccagctgagcgcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaag 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 27294600 - 27294658
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    ||||||||||||||||| | ||||||||||||||| | ||||  ||||||||| |||||    
T  27294600 gtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagcaa 27294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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