View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13747_high_6 (Length: 403)
Name: NF13747_high_6
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13747_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 173 - 397
Target Start/End: Complemental strand, 36541034 - 36540811
Alignment:
| Q |
173 |
cttattagttcaagctcttgtagttatcaatagatagtacatacccatacattcaatgaggcgctggaaactaataaatttctacctatcttgcttgcnn |
272 |
Q |
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| T |
36541034 |
cttattagttcaagctcttgtagttatcaatagatagtacatacccatacattaaatgaggcgctggaaactaataaatttctacctatcttgcttgctt |
36540935 |
T |
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| Q |
273 |
nnnnnnnnnnnngttcaccctctggttctagcagaaagaggtctagtaattcagagttgagttaagtaaattcttacaaaatattgttccatttaagaat |
372 |
Q |
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| T |
36540934 |
ttttttttttg-gttcaccctctagttctagcggaaagaggtctagtaattcagagttgagttaagtaaattcttataaaatattgttccatttaagaat |
36540836 |
T |
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| Q |
373 |
caaattatcacgaacaattcgtctt |
397 |
Q |
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| T |
36540835 |
caaattatcacgaacaattcgtctt |
36540811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 36541565 - 36541412
Alignment:
| Q |
20 |
atgtatgtgttgaatattgtttatttcttgttagttgacattgtttgtttcttnnnnnnnnn-----ttgtaacacccccatatgatattatttctctct |
114 |
Q |
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| T |
36541565 |
atgtatgtgttgaatattgtttatttcttgttagttgacattgtttgtttcttaaaaaaaataaaaattgtaacacctctatatgatattatttctctct |
36541466 |
T |
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| Q |
115 |
aagggatgatttctattgtaacaacatgaatagcaacagatattttctatttct |
168 |
Q |
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| T |
36541465 |
aagggatgatttctattgtaacaacatgaatagcaacaaatgttttctatttct |
36541412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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