View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13747_low_10 (Length: 374)

Name: NF13747_low_10
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13747_low_10
NF13747_low_10
[»] chr3 (21 HSPs)
chr3 (157-357)||(17688557-17688757)
chr3 (156-357)||(37983795-37983998)
chr3 (156-357)||(31686592-31686793)
chr3 (41-114)||(17689613-17689686)
chr3 (42-114)||(31687815-31687887)
chr3 (41-114)||(12531173-12531246)
chr3 (41-114)||(19769836-19769909)
chr3 (41-114)||(24124600-24124673)
chr3 (41-114)||(37985029-37985102)
chr3 (42-114)||(53972370-53972442)
chr3 (41-112)||(19881193-19881264)
chr3 (32-103)||(33648110-33648181)
chr3 (41-103)||(24758760-24758822)
chr3 (41-103)||(24767757-24767819)
chr3 (48-101)||(24813321-24813374)
chr3 (42-102)||(53024667-53024727)
chr3 (48-103)||(24827192-24827247)
chr3 (40-103)||(50836121-50836184)
chr3 (40-103)||(50839669-50839732)
chr3 (42-112)||(32013721-32013791)
chr3 (41-89)||(33648062-33648110)
[»] chr6 (5 HSPs)
chr6 (199-357)||(22000121-22000279)
chr6 (42-114)||(31891253-31891325)
chr6 (42-114)||(21999134-21999206)
chr6 (41-86)||(2918372-2918417)
chr6 (41-86)||(33043139-33043184)
[»] chr7 (9 HSPs)
chr7 (156-273)||(48848251-48848368)
chr7 (156-273)||(1263615-1263732)
chr7 (41-114)||(1264880-1264953)
chr7 (41-114)||(48846985-48847058)
chr7 (42-114)||(26906538-26906610)
chr7 (40-110)||(14237175-14237245)
chr7 (41-114)||(43070152-43070225)
chr7 (319-357)||(48848381-48848419)
chr7 (319-357)||(1263564-1263602)
[»] scaffold0596 (1 HSPs)
scaffold0596 (41-114)||(1618-1691)
[»] chr2 (3 HSPs)
chr2 (42-114)||(12742920-12742992)
chr2 (42-114)||(23347751-23347823)
chr2 (42-112)||(18354077-18354148)
[»] chr8 (8 HSPs)
chr8 (43-114)||(14672345-14672416)
chr8 (40-114)||(27535269-27535343)
chr8 (49-114)||(8164076-8164141)
chr8 (42-103)||(11730995-11731056)
chr8 (42-103)||(23741307-23741368)
chr8 (42-103)||(23741404-23741465)
chr8 (42-86)||(5662539-5662583)
chr8 (42-86)||(31098579-31098623)
[»] scaffold0096 (1 HSPs)
scaffold0096 (40-114)||(32658-32732)
[»] chr1 (2 HSPs)
chr1 (44-114)||(25226927-25226997)
chr1 (157-225)||(39074204-39074272)
[»] chr5 (8 HSPs)
chr5 (42-114)||(9045081-9045153)
chr5 (42-114)||(30441367-30441439)
chr5 (42-114)||(30442667-30442739)
chr5 (41-114)||(32872136-32872209)
chr5 (42-102)||(22002823-22002883)
chr5 (41-114)||(7472278-7472351)
chr5 (41-89)||(26836400-26836448)
chr5 (49-114)||(36971125-36971190)
[»] scaffold0035 (1 HSPs)
scaffold0035 (41-114)||(37229-37302)
[»] chr4 (3 HSPs)
chr4 (41-114)||(29861237-29861310)
chr4 (44-114)||(48289904-48289974)
chr4 (41-89)||(21207385-21207433)
[»] scaffold0045 (1 HSPs)
scaffold0045 (41-114)||(10085-10158)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 157 - 357
Target Start/End: Complemental strand, 17688757 - 17688557
Alignment:
Q  157 tatatatgagcaaagtcttggtaattagaccattttaaattcatatttatagtcagttttgaaacatatatgtcacttatatatataatggtaaaagaac 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  17688757 tatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagtttttaaacatatatgtcacttataaatataatggtaaaagaac 17688658  T
Q  257 tttcattattcactaagataagaagtggaatataaagaaacacactgccatcattccagtttcaaatctaagttatataaccaagacgacaacacaacat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17688657 tttcattattcactaagataagaagtggaatataaagaaacacactgtcatcattccagtttcaaatctaagtaatataaccaagacgacaacacaacat 17688558  T
Q  357 t 357  Q
    |    
T  17688557 t 17688557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 156 - 357
Target Start/End: Complemental strand, 37983998 - 37983795
Alignment:
Q  156 ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttatagtcagttttgaaacatatatgtcacttatata--tataatggtaaaag 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37983998 ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatatatgtcacttatataaatataatggtaaaag 37983899  T
Q  254 aactttcattattcactaagataagaagtggaatataaagaaacacactgccatcattccagtttcaaatctaagttatataaccaagacgacaacacaa 353  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37983898 aacttttattattcactaagataagaagtggaatataaagaaacacactgccatcattccagtttcaaatctaagtaatataaccaagacgacaacacaa 37983799  T
Q  354 catt 357  Q
    ||||    
T  37983798 catt 37983795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 156 - 357
Target Start/End: Complemental strand, 31686793 - 31686592
Alignment:
Q  156 ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttatagtcagttttgaaacatatatgtcacttatatatataatggtaaaagaa 255  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31686793 ttatatatgggcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttgaaacatatatgtcacttataaatataatggtaaaagaa 31686694  T
Q  256 ctttcattattcactaagataagaagtggaatataaagaaacacactgccatcattccagtttcaaatctaagttatataaccaagacgacaacacaaca 355  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| | |||||    
T  31686693 ctttcattattcactaagataagaagtgaaatataaaaaaacacactgccatcattccggtttcaaatctaagtaatataaccatgacaacagcccaaca 31686594  T
Q  356 tt 357  Q
    ||    
T  31686593 tt 31686592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 17689686 - 17689613
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  17689686 aactaggacttttacccgtgctaacgcccgggacattaaaaatggagaagctaaaaaagttccgatattattca 17689613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 31687887 - 31687815
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | || | ||||||||||| ||||||||||    
T  31687887 actaggacttttacccgtgctaacgcccgggacattaaaaatgaagaagcaaaaaaagttccgatattattca 31687815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 12531173 - 12531246
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||| || |||| |||||||| ||||||||||    
T  12531173 aactaggatgtttacccgtgctaacgcccgggacattaaaaatggagaagctaacaaagttccgatattattca 12531246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 19769909 - 19769836
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||||||   ||||||||||    
T  19769909 aactagaacttttacccgtgctaacgcccgggacattaaaaatggagaagctaaaaaagttttgatattattca 19769836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 24124600 - 24124673
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| | || ||||||| ||||| ||||||||||    
T  24124600 aactaggacttttacccttgctaacgcccgggacattaaaaatgaagaagctaaaaatgttccgatattattca 24124673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 37985102 - 37985029
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||| ||  |||||||||||| ||||||||||    
T  37985102 aactaggactattacccgtgctaacgcccgggacattaaaaacggagaagttaaaaaagttccgatattattca 37985029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 53972370 - 53972442
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||| ||| ||||||||| |||||| |||||||||||||| || ||||||||||||| ||||||||||    
T  53972370 actaggactattatccgtgctaacgcccggaacattaaaaatggagaagctaaaaaagttccgatattattca 53972442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 19881193 - 19881264
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattatt 112  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||| ||  |||||||||||| ||||||||    
T  19881193 aactaggactattacccgtgctaacgtccgggacattaaaaatggagaagttaaaaaagttccgatattatt 19881264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 33648110 - 33648181
Alignment:
Q  32 aattaaaagaactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||| | |||||| ||||||||||||||||  ||| ||||||||||||||||||||  ||||||||||||    
T  33648110 aattaagaaaactagtacttttacccgtgctaccgcctgggacattaaaaatggaaaagttaaaaaagttcc 33648181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 24758760 - 24758822
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||||  || |||||||||    
T  24758760 aactagtacttttacccgtgctaccgcccgggacattaaaaatggaaaagttataaaagttcc 24758822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 24767757 - 24767819
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||||  || |||||||||    
T  24767757 aactagtacttttacccgtgctaccgcccgggacattaaaaatggaaaagttataaaagttcc 24767819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 24813374 - 24813321
Alignment:
Q  48 acttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagtt 101  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||| |||||||    
T  24813374 acttttacccgtgctaccgcccgggacattaaaaatggaaaagctataaaagtt 24813321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 53024667 - 53024727
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttc 102  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||| ||| ||||||||    
T  53024667 actagtacttttacccgtgctaccgtccgggacattaaaaatggaaaagctataaaagttc 53024727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 24827247 - 24827192
Alignment:
Q  48 acttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    ||||||||||||||||  ||||||||||||||||||||||||  || |||||||||    
T  24827247 acttttacccgtgctaccgcccgggacattaaaaatggaaaagttataaaagttcc 24827192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 50836184 - 50836121
Alignment:
Q  40 gaactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| ||  | ||||||||||    
T  50836184 gaactaggccttttacccgtgctaccgcccgggacattaaaaatggagaagttgaaaaagttcc 50836121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 50839669 - 50839732
Alignment:
Q  40 gaactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||| ||  | ||||||||||    
T  50839669 gaactaggccttttacccgtgctaccgcccgggacattaaaaatggagaagttgaaaaagttcc 50839732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 32013721 - 32013791
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattatt 112  Q
    ||||| ||| ||||||||||||  ||||||||||||||||||||  || ||||||||  ||||||||||||    
T  32013721 actagtactattacccgtgctaccgcccgggacattaaaaatggggaagctaaaaaatatccaatattatt 32013791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 33648062 - 33648110
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaa 89  Q
    |||||| |||||||| |||||||  | ||||||||||||||||||||||    
T  33648062 aactagtacttttactcgtgctaccgtccgggacattaaaaatggaaaa 33648110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 199 - 357
Target Start/End: Original strand, 22000121 - 22000279
Alignment:
Q  199 atatttatagtcagttttgaaacatatatgtcacttatatatataatggtaaaagaactttcattattcactaagataagaagtggaatataaagaaaca 298  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22000121 atatttataatcagttgtgaaacatatatgtcacttatatatataatggtaaaagaactttcattattcactaagataagaagtggaatataaagaaaca 22000220  T
Q  299 cactgccatcattccagtttcaaatctaagttatataaccaagacgacaacacaacatt 357  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22000221 cactgccatcattccagtttcaaatctaagtaatataaccaagacgacaacacaacatt 22000279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 31891253 - 31891325
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||    
T  31891253 actaggacttttacccgtgctaatgcccgggacattaaaaatgaagaagctaaaaaagttccgatattattca 31891325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 21999134 - 21999206
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||| |||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||    
T  21999134 actaggacgtttatccgtgctaacgtccgggacattaaaaatgaaaaacctaaaaaagttccaatattattca 21999206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 2918372 - 2918417
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatgga 86  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||    
T  2918372 aactaggtcttttacccgtgctaccgcccgggacattaaaaatgga 2918417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 33043139 - 33043184
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatgga 86  Q
    ||||||||||||| |||||||||| ||||| |||||||||||||||    
T  33043139 aactaggacttttgcccgtgctaacgcccgagacattaaaaatgga 33043184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 48848251 - 48848368
Alignment:
Q  156 ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttatagtcagttttgaaacatatatgtcacttatatatataatggtaaaagaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  48848251 ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttaaaacatatatgtcacttataaatataatggtaaaagaa 48848350  T
Q  256 ctttcattattcactaag 273  Q
    ||||||||||||||||||    
T  48848351 ctttcattattcactaag 48848368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 1263732 - 1263615
Alignment:
Q  156 ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttatagtcagttttgaaacatatatgtcacttatatatataatggtaaaagaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  1263732 ttatatatgagcaaagtcttggtaattagaccattttaaattcatatttagagtcagttttaaaacatatatgtcacttataaatataatggtaaaagaa 1263633  T
Q  256 ctttcattattcactaag 273  Q
    |||| |||||||||||||    
T  1263632 cttttattattcactaag 1263615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 1264953 - 1264880
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | || |||||||| |||| ||||||||||    
T  1264953 aactaggacttttacccgtgctaacgcccgggacattaaaaatgaagaagctaaaaaaattccgatattattca 1264880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 48846985 - 48847058
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | || |||||||| |||| ||||||||||    
T  48846985 aactaggacttttacccgtgctaacgcccgggacattaaaaatgaagaagctaaaaaaattccgatattattca 48847058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 26906538 - 26906610
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  26906538 actaggacttttacccgtgctaccgcccgggacattaaaaatggagaaggtaaaaaagttccgatattattca 26906610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 14237245 - 14237175
Alignment:
Q  40 gaactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatatta 110  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||||  ||||||| |||| ||||||    
T  14237245 gaactaggactattacccgtgctaacgctcgggacattaaaaatggaaaagttaaaaaaattccgatatta 14237175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 43070152 - 43070225
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||| ||| ||||| ||| | ||||||||||||||||||| || ||||||||||||| ||||||||||    
T  43070152 aactaggactattatccgtgttaacgtccgggacattaaaaatggagaagctaaaaaagttccgatattattca 43070225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 48848381 - 48848419
Alignment:
Q  319 caaatctaagttatataaccaagacgacaacacaacatt 357  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  48848381 caaatctaagtaatataaccaagacgacaacacaacatt 48848419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 1263602 - 1263564
Alignment:
Q  319 caaatctaagttatataaccaagacgacaacacaacatt 357  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  1263602 caaatctaagtaatataaccaagacaacaacacaacatt 1263564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 1691 - 1618
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  1691 aactaggactattacccgtgctaacgcccgggacattaaaaatggagaagctaaaaaagttccgatattattca 1618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 12742992 - 12742920
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  12742992 actaggactattacccgtgctaacgcccgggacattaaaaatggagaagctaaaaaagttccgatattattca 12742920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 23347751 - 23347823
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  23347751 actaggactattacccgtgctaacgcccgggacattaaaaatggagaagctaaaaaagttccgatattattca 23347823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 18354077 - 18354148
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacct-aaaaaagttccaatattatt 112  Q
    |||| |||| ||||||||| ||||| || |||||||||||||||| || || ||||||||||| ||||||||    
T  18354077 actatgactattacccgtgttaatgtccaggacattaaaaatggagaagctaaaaaaagttccgatattatt 18354148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 14672345 - 14672416
Alignment:
Q  43 ctaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| ||||||||||    
T  14672345 ctaggacttttacccgtgctaacgcccgggacattaaaaatgaagaagctaaaaaagttccgatattattca 14672416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 27535269 - 27535343
Alignment:
Q  40 gaactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||  ||||||||||    
T  27535269 gaactaggacttttacccgtgctaacgctcgggacattaaaaatggagaagctaaaaaagttctgatattattca 27535343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 8164141 - 8164076
Alignment:
Q  49 cttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||  ||||||||||||||||||||| ||  |||||||||||  ||||||||||    
T  8164141 cttttacccgtgctaccgcccgggacattaaaaatggagaagttaaaaaagttctgatattattca 8164076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 11731056 - 11730995
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||| ||||| |||||||||  ||||| ||||||||||||||| || |||||||||||||    
T  11731056 actaggtcttttgcccgtgctaccgcccgagacattaaaaatggagaagctaaaaaagttcc 11730995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 23741368 - 23741307
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||| ||||| |||||||||  ||||| ||||||||||||||| || |||||||||||||    
T  23741368 actaggtcttttgcccgtgctaccgcccgagacattaaaaatggagaagctaaaaaagttcc 23741307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 23741465 - 23741404
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttcc 103  Q
    |||||| ||||| |||||||||  ||||| ||||||||||||||| || |||||||||||||    
T  23741465 actaggtcttttgcccgtgctaccgcccgagacattaaaaatggagaagctaaaaaagttcc 23741404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 5662583 - 5662539
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatgga 86  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  5662583 actaggacttttgcccgtgctaacgcccaggacattaaaaatgga 5662539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 31098579 - 31098623
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatgga 86  Q
    |||||||||||| |||||||||| |||||||  ||||||||||||    
T  31098579 actaggacttttgcccgtgctaacgcccggggtattaaaaatgga 31098623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 32732 - 32658
Alignment:
Q  40 gaactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||  ||||||||||    
T  32732 gaactaggacttttacccgtgctaacgcccgggacattaaaaatggagaagctaacaaagttctgatattattca 32658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 25226997 - 25226927
Alignment:
Q  44 taggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  25226997 taggactattacccgtgctaacgcccgggacattaaaaatggaaaagttaaaaaagttccgatattattca 25226927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39074204 - 39074272
Alignment:
Q  157 tatatatgagcaaagtcttggtaattagaccattttaaattcatatttatagtcagttttgaaacatat 225  Q
    ||||||| | || ||||||||||| |  || |||||||||||||||||| |||||||||| ||||||||    
T  39074204 tatatataaacagagtcttggtaaatcaactattttaaattcatatttaaagtcagttttaaaacatat 39074272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 9045153 - 9045081
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  9045153 actaggattattacccgtgctaacgcccgggacattaaaaatggagaagctaaaaaagttccgatattattca 9045081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 30441367 - 30441439
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||| ||||||||||    
T  30441367 actaggactattacccgtgctaacgtccgggacattaaaaatggagaagctaaaaaagttccgatattattca 30441439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 30442667 - 30442739
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||  |||||| ||||| ||||||||||    
T  30442667 actaggactattacccgtgctaacgcccgggacattaaaaatggaaaagttaaaaatgttccgatattattca 30442739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 32872209 - 32872136
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||| | | ||||||||    
T  32872209 aactaggacttttacccgtgctaacgcccgggacattaaaaatgaagaagctaaaaaagttacgaaattattca 32872136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 22002823 - 22002883
Alignment:
Q  42 actaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttc 102  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||    
T  22002823 actaggacttttacccgtgttaacgcctgggacattaaaaatggaaaagctaaaaaagttc 22002883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 7472278 - 7472351
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||| |||| |||||||| | |||||||||||||||| || || ||||||||||||| ||||||||||    
T  7472278 aactaggactattacacgtgctaacgtccgggacattaaaaatagagaagctaaaaaagttccgatattattca 7472351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 26836400 - 26836448
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaa 89  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||||    
T  26836400 aactaggacttttacccgtgctaccgcccgggacattaacaatggaaaa 26836448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 36971190 - 36971125
Alignment:
Q  49 cttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||  |||||||| |||||||||||| ||  ||||||||||||||  |||||||    
T  36971190 cttttacccgtgctaccgcccgggatattaaaaatggagaagttaaaaaagttccaaatttattca 36971125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 37302 - 37229
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||| |||||||||||||  |||||||||||||||||| | || ||||||||||||| ||||||||||    
T  37302 aactaggactgttacccgtgctaacacccgggacattaaaaatgaagaagctaaaaaagttccgatattattca 37229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 29861237 - 29861310
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    |||||||||||||||||||||||| || |||||||||||||| | | || ||||||||||||| ||||||||||    
T  29861237 aactaggacttttacccgtgctaacgctcgggacattaaaaacgaagaagctaaaaaagttccgatattattca 29861310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 48289974 - 48289904
Alignment:
Q  44 taggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| || |||||||| |||  ||||||||||    
T  48289974 taggacttttacccgtgttaacgtccgggacattaaaaatggagaagctaaaaaaattctgatattattca 48289904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 21207385 - 21207433
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaa 89  Q
    |||||| ||||||||||||||||  |||||||||||||| |||||||||    
T  21207385 aactagtacttttacccgtgctaccgcccgggacattaacaatggaaaa 21207433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 10085 - 10158
Alignment:
Q  41 aactaggacttttacccgtgctaatgcccgggacattaaaaatggaaaacctaaaaaagttccaatattattca 114  Q
    ||||||| |||||||||||||||  ||| ||||||||||||||||| || ||||||| ||||  ||||||||||    
T  10085 aactaggtcttttacccgtgctatcgcctgggacattaaaaatggagaaactaaaaatgttctgatattattca 10158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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