View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13747_low_13 (Length: 295)
Name: NF13747_low_13
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13747_low_13 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2748979 - 2748688
Alignment:
| Q |
1 |
agacagtcgaggatcacgccatttgccattttctctctctcctatgctaatgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctca |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2748979 |
agacagtcgaggatcatgccattttccattttctctctctcctatgctaatgctgcttgaagttccttgttcgtgtgaaatttgaaagttatacctctca |
2748880 |
T |
|
| Q |
101 |
cttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748879 |
cttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgc |
2748780 |
T |
|
| Q |
201 |
cgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748779 |
cgactaaagatccgcatctaggaggattggccctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2748688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 76 - 292
Target Start/End: Complemental strand, 5412813 - 5412597
Alignment:
| Q |
76 |
tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaa |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
5412813 |
tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaa |
5412714 |
T |
|
| Q |
176 |
gttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgc |
275 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||| | |||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
5412713 |
gttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattgaccctatgcattagccgatggtattcgtcaatgacatcttcaatgc |
5412614 |
T |
|
| Q |
276 |
gaaatgatgcttctctc |
292 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5412613 |
gaaatgatgcttctctc |
5412597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 74 - 292
Target Start/End: Complemental strand, 2797269 - 2797051
Alignment:
| Q |
74 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatca |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||| || ||| ||| ||||| |
|
|
| T |
2797269 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatca |
2797170 |
T |
|
| Q |
174 |
aagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaat |
273 |
Q |
| |
|
| ||||||||| | ||||||||||||| |||||||||||| |||| ||||||| || ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
2797169 |
atgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatcagctgaaggtattcatcaatgacatcttcaat |
2797070 |
T |
|
| Q |
274 |
gcgaaatgatgcttctctc |
292 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2797069 |
gcgaaatgatgcttctctc |
2797051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2855964 - 2856258
Alignment:
| Q |
1 |
agacagtcgaggatcacgccatttgccattttctctctctcctatgctaatgct---gcttgaagttcctcgttcgtgtgaaatttgaaagttatacctc |
97 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||||| ||| | || |||||| | |||| | ||||||||||||||||||||||||||| |
|
|
| T |
2855964 |
agacagtcgaggatcacgccatcttccattttctgtctctccactgcggtttctttggcttgaggatccttgctcgtgtgaaatttgaaagttatacctc |
2856063 |
T |
|
| Q |
98 |
tcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatct |
197 |
Q |
| |
|
| |||||||||||||||||||||||||| || || ||||||||||| || ||||| || | |||| |||||||||||||||||||| | |||| || || |
|
|
| T |
2856064 |
tggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatcaaagttttgattcggcttgtaacct |
2856163 |
T |
|
| Q |
198 |
tgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
|| |||||||||||||| || | ||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2856164 |
tgttgactaaagatccacgtccatgaggattggccctatgtatcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2856258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 292
Target Start/End: Complemental strand, 2769000 - 2768759
Alignment:
| Q |
51 |
tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcaga |
150 |
Q |
| |
|
||||| |||| | |||| |||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||| || |||||||||||||| || | |
|
|
| T |
2769000 |
tgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaa |
2768901 |
T |
|
| Q |
151 |
tgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaagg |
250 |
Q |
| |
|
||| || | |||||||||| |||||||||||||| | |||||||||||| || ||||||||| | ||| ||| |||||| |||||| | | ||||||| |
|
|
| T |
2768900 |
tgcaattttatgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattggccctatgggtcaaccgaagg |
2768801 |
T |
|
| Q |
251 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2768800 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2768759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 74 - 292
Target Start/End: Complemental strand, 2790275 - 2790048
Alignment:
| Q |
74 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatca |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||| |||||| ||||||||| |
|
|
| T |
2790275 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatca |
2790176 |
T |
|
| Q |
174 |
aagttttgatttgccttgcaatcttgccgactaaagat---ccacatctaggaggattg------gtcctatgcattagccgaaggtattcatcaatgac |
264 |
Q |
| |
|
||||||||||| | ||||||||||||| || ||||||| | |||| || ||||||| | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
2790175 |
aagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgat |
2790076 |
T |
|
| Q |
265 |
atcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2790075 |
atcttcaatgcgaaatgatgcttctctc |
2790048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 2807251 - 2806955
Alignment:
| Q |
1 |
agacagtcgaggatcacgccatttgccattttctctctctcctatgctaatgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctca |
100 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| |||||| |||| ||| |||||| | |||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
2807251 |
agacagtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggcttgatgatccttgttcatgtgaaatttgtaagttatacctctca |
2807152 |
T |
|
| Q |
101 |
cttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgc |
200 |
Q |
| |
|
||||||||||||||||| |||| || | |||||||| | || | ||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
2807151 |
cttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaagttttgaccaggcttgcaatcttgt |
2807052 |
T |
|
| Q |
201 |
cgactaaagatcca---catctaggagga------ttggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc |
288 |
Q |
| |
|
|| | |||||||| |||| ||||||| || | | ||||||| |||||| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
2807051 |
agaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatatcttcaatgcgaaatgatgcttc |
2806955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 51 - 292
Target Start/End: Original strand, 2838810 - 2839048
Alignment:
| Q |
51 |
tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcaga |
150 |
Q |
| |
|
|||||||||| | |||| |||| | |||||||||||||||||||||||| ||||||| ||||||||| || ||| | || ||||| ||||| || || |
|
|
| T |
2838810 |
tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga |
2838909 |
T |
|
| Q |
151 |
tgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaagg |
250 |
Q |
| |
|
||| || | |||||||||||||||||||||||| ||||| | || ||| |||||||| |||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
2838910 |
tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaagg |
2839006 |
T |
|
| Q |
251 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2839007 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2839048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 64 - 292
Target Start/End: Complemental strand, 2818475 - 2818247
Alignment:
| Q |
64 |
tcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatga |
163 |
Q |
| |
|
|||| |||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| || || ||||||||||| || ||||| || | || | |
|
|
| T |
2818475 |
tccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaatttcataa |
2818376 |
T |
|
| Q |
164 |
cggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatga |
263 |
Q |
| |
|
|||||| ||||||| || ||| |||| |||||||| || ||||||| |||| |||| |||||||||||| || | |||||||||||||||||| |
|
|
| T |
2818375 |
cggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcctatggatcaaaagaaggtattcatcaatga |
2818276 |
T |
|
| Q |
264 |
catcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
2818275 |
catcttcaatgcgaaatgatgcatctctc |
2818247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2759198 - 2758904
Alignment:
| Q |
1 |
agacagtcgaggatcacgccatttgccattttctctctctcc--ta-tgctaatgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctc |
97 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||| ||||| | || || | ||||| |||| | |||| |||| | |||||||||||||||||||||| |
|
|
| T |
2759198 |
agacagtcgaggatcacgccatcttccattttctttctcttcggtagtgttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctc |
2759099 |
T |
|
| Q |
98 |
tcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatct |
197 |
Q |
| |
|
| ||||||||||||||||| |||||| | || ||||| ||||| || ||||| || | |||||||||||||||||||||||| | |||| ||||| |
|
|
| T |
2759098 |
acgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatct |
2758999 |
T |
|
| Q |
198 |
tgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
|| || || |||||| | | ||||||||||| | |||| || |||||||||||||| ||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
2758998 |
tgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaacgatgcttctctc |
2758904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 2755782 - 2755734
Alignment:
| Q |
244 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2755782 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2755734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 6312 - 6596
Alignment:
| Q |
7 |
tcgaggatcacgccatttgccattttctctctctcctatgctaatgctg---cttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcactt |
103 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||| |||| ||||| ||||| | ||| |||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
6312 |
tcgaggatcacgccatcttccattttctgcctctcctgtgctgctgctgacacttgatgatccaggttcatgtaaaatttgaaagttatacctttcactt |
6411 |
T |
|
| Q |
104 |
ctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccga |
203 |
Q |
| |
|
|| |||||||||||||||||||| | || ||||||||||| ||||||||||| ||||| | | |||||||||||||||| | ||| ||||||||| || |
|
|
| T |
6412 |
ctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagttttgattaggcttacaatcttgcaga |
6511 |
T |
|
| Q |
204 |
ctaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc |
288 |
Q |
| |
|
|||| ||||| |||| |||||| |||| |||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6512 |
ctaatgatccgcatccaggagggttggccctatggatcagccgaaggtattcatcaataacatcttcaatgcgaaatgatgcttc |
6596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University