View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13747_low_16 (Length: 223)

Name: NF13747_low_16
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13747_low_16
NF13747_low_16
[»] chr3 (20 HSPs)
chr3 (1-205)||(2748940-2749144)
chr3 (1-205)||(5412831-5413035)
chr3 (1-195)||(2807212-2807406)
chr3 (1-205)||(2759159-2759363)
chr3 (19-205)||(2818520-2818706)
chr3 (7-205)||(2838589-2838787)
chr3 (1-205)||(2855799-2856003)
chr3 (7-205)||(2769020-2769218)
chr3 (19-192)||(2797324-2797497)
chr3 (19-180)||(2790330-2790491)
chr3 (140-201)||(21945673-21945734)
chr3 (125-182)||(22648533-22648590)
chr3 (125-201)||(21930455-21930531)
chr3 (125-201)||(22028034-22028110)
chr3 (125-201)||(22034551-22034627)
chr3 (125-201)||(22179451-22179527)
chr3 (143-201)||(22104775-22104833)
chr3 (143-201)||(22187040-22187098)
chr3 (144-201)||(22052786-22052843)
chr3 (143-183)||(22621288-22621328)
[»] scaffold0691 (1 HSPs)
scaffold0691 (7-205)||(6141-6339)
[»] chr8 (1 HSPs)
chr8 (143-201)||(27294600-27294658)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2748940 - 2749144
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  2748940 agagagagaaaatggaaaatggcatgatcctcgactgtcttctctttttattgaagaaacagaagttgttggtattgaagtcccaaaagaagaactgtct 2749039  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749040 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 2749139  T
Q  201 aaaag 205  Q
    |||||    
T  2749140 aaaag 2749144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 5412831 - 5413035
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| || || |||  ||||||||||||||| |||||||||||||||||||||||| |||||    
T  5412831 agagacagaaaatggaagatggcgagatcctcgactgtcttccctattcattacagaaacagaagttgtaggaattgaaggtccaaaagaagaattgtct 5412930  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    ||||||||||||||||||| ||| || || || || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  5412931 ggttggttattggatggtgcagcggaacgtacagtcatatcagtggtaggaatggggggcctaggaaaaaccactcttgccaagctagtttttgaaagcc 5413030  T
Q  201 aaaag 205  Q
    |||||    
T  5413031 aaaag 5413035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 2807212 - 2807406
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||| ||| |||||   |||| ||||||| |||||    
T  2807212 agagacagaaaatggaagatggcgtgatcctcgactgtcttccctttttattgaagaaagagaaattgtaggatttgaattcccaagagaagaaatgtct 2807311  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttga 195  Q
    | |||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2807312 gtttggttattggagggtgtagctgagcgcacggtgatttcggtggtaggaatgggaggtctaggaaaaaccactcttgccaagctagtttttga 2807406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2759159 - 2759363
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||| ||||||| |||||||||||||| | |    
T  2759159 agagaaagaaaatggaagatggcgtgatcctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaaaagaagaactatat 2759258  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    |||||||||||||| |||  |||||| ||||| ||||| || |||||||||||||| || || || ||||||||||||||||||||||||||||| |||     
T  2759259 ggttggttattggagggttcagctgaacgcacagtgatttcagtggtaggaatggggggtctcggcaaaaccactcttgccaagctagtttttgacagcc 2759358  T
Q  201 aaaag 205  Q
    |||||    
T  2759359 aaaag 2759363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 2818520 - 2818706
Alignment:
Q  19 atggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttggttattggatggt 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||| ||||||| || | ||||||||| | ||||||||||||||| |||    
T  2818520 atggcgtgatcctcgactgtcttctcttttcattgaagaaacagaaatcgtaggatttgaaggcccgagagaagaactatatggttggttattggagggt 2818619  T
Q  119 gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    | ||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||    
T  2818620 gcagccgagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaag 2818706  T

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Target: chr3; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 2838787 - 2838589
Alignment:
Q  7 agaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttgg 106  Q
    ||||||||||| |||||  || |||||||||||||| ||||| ||||||||||||||| |||| ||| ||||||| |||| ||||||| | | |||||||    
T  2838787 agaaaatggaagatggcacgaccctcgactgtcttcccttttcattgaagaaacagaaattgtaggatttgaaggcccaagagaagaaatatatggttgg 2838688  T
Q  107 ttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    |||||||| |||| |||||||||||| || ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  2838687 ttattggagggtgcagctgagcgcacagtcatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaagctagtttttgaaagccaaaag 2838589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 2856003 - 2855799
Alignment:
Q  1 agagagagaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtct 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||| |||||    
T  2856003 agagacagaaaatggaagatggcgtgatcctcgactgtcttcccttttcattgaagaaacagaagttgtaggcattgaaggcccaaaagaagaattgtct 2855904  T
Q  101 ggttggttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagca 200  Q
    |||||||||||||| |||  | |||||||||  ||||| || ||||| |||||||| ||  |||||||||| ||||||||||||||| ||||||| |||     
T  2855903 ggttggttattggaaggtatatctgagcgcaaagtgatttcagtggtgggaatggggggtataggaaaaactactcttgccaagctaatttttgacagcc 2855804  T
Q  201 aaaag 205  Q
    |||||    
T  2855803 aaaag 2855799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 2769020 - 2769218
Alignment:
Q  7 agaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttgg 106  Q
    ||||| ||||| |||||||||||||||  ||||||| || |||||||||||||||||| |||| ||| | ||||| |||| ||||||| | | |||||||    
T  2769020 agaaagtggaagatggcgtgatcctcggatgtcttccctctttattgaagaaacagaaattgtaggattggaaggcccaagagaagaattatttggttgg 2769119  T
Q  107 ttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    |||||||| |||| |||| ||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||| ||| ||| |||||    
T  2769120 ttattggagggtgcagctaagcgcacagtgatatcagtggtaggaatggggggtctaggaaaaaccactcttgccaaactagtttatgacagccaaaag 2769218  T

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Target: chr3; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 2797324 - 2797497
Alignment:
Q  19 atggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttggttattggatggt 118  Q
    |||| ||||||||||||||||||| ||||||||||||||||| | | |||| ||| ||||||| || |  |||||| |||||||||||||| | || ||     
T  2797324 atggtgtgatcctcgactgtcttccctttttattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttactagagggc 2797423  T
Q  119 gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttt 192  Q
      |||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  2797424 acagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgccaagctagtttt 2797497  T

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Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 2790330 - 2790491
Alignment:
Q  19 atggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttggttattggatggt 118  Q
    ||||| |||||||||  ||||||| ||||| ||||||||||| | | |||| ||| ||||||| || |  |||||| ||||||||||||||||||| ||     
T  2790330 atggcatgatcctcggttgtcttcccttttcattgaagaaactgcaattgtcggatttgaaggcccgagggaagaattgtctggttggttattggagggc 2790429  T
Q  119 gaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgc 180  Q
      |||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||    
T  2790430 acagctgagcgcacagtgatttcagtggttggaatgggaggtctaggaaaaaccactcttgc 2790491  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 21945673 - 21945734
Alignment:
Q  140 tccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||||||||||||||| | ||||||||||||||| ||||||  ||||||||| |||||    
T  21945673 tccgtggtaggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaa 21945734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 22648590 - 22648533
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgcca 182  Q
    |||||||| || || || |||||||| |||||||| ||||||||||||||||||||||    
T  22648590 gagcgcactgtcatctctgtggtaggtatgggagggctaggaaaaaccactcttgcca 22648533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 21930455 - 21930531
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  21930455 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 21930531  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 22028034 - 22028110
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22028034 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22028110  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 22034551 - 22034627
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| | || ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22034551 gagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22034627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 22179451 - 22179527
Alignment:
Q  125 gagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||| ||| ||| |||||| ||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22179451 gagcgcactgtggtattcgtggtgggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22179527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 22104775 - 22104833
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22104775 gtggtaggaatgggagggcaaggaaaaacaactctagccaagagagtttttgacagcaa 22104833  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 22187040 - 22187098
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    ||||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22187040 gtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22187098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 22052786 - 22052843
Alignment:
Q  144 tggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    |||||||||||||||| | ||||||||| ||||| ||||||  ||||||||| |||||    
T  22052786 tggtaggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaa 22052843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 22621328 - 22621288
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaa 183  Q
    ||||||||||||||||| | ||||||| |||||||||||||    
T  22621328 gtggtaggaatgggaggacaaggaaaatccactcttgccaa 22621288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 6339 - 6141
Alignment:
Q  7 agaaaatggaaaatggcgtgatcctcgactgtcttctctttttattgaagaaacagaagttgttggaattgaaggtccaaaagaagaactgtctggttgg 106  Q
    ||||||||||| |||||||||||||||| | ||| | ||||||||||||||||| |||||||| ||| | ||||| |||| ||| ||| | | |||||||    
T  6339 agaaaatggaagatggcgtgatcctcgattatctgccctttttattgaagaaactgaagttgtaggattcgaaggcccaagagaggaattatatggttgg 6240  T
Q  107 ttattggatggtgaagctgagcgcacggtgatatccgtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaaaaag 205  Q
    ||||||||  ||  |||||||||||| || || || |||||||||||||||||  |||| ||||||||||||||||||||||||||||| ||| |||||    
T  6239 ttattggagagtccagctgagcgcaccgtaatttcagtggtaggaatgggaggtatagggaaaaccactcttgccaagctagtttttgacagccaaaag 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 27294600 - 27294658
Alignment:
Q  143 gtggtaggaatgggaggcctaggaaaaaccactcttgccaagctagtttttgaaagcaa 201  Q
    ||||||||||||||||| | ||||||||||||||| | ||||  ||||||||| |||||    
T  27294600 gtggtaggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgacagcaa 27294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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