View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13747_low_5 (Length: 464)
Name: NF13747_low_5
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13747_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 5446693 - 5447126
Alignment:
| Q |
16 |
tgagaagaatgatgagggatgccgagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcgaagaacttgtttgagaattatgtttatga |
115 |
Q |
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| T |
5446693 |
tgagaagaatgatgagggatgccgagcggtataaggcagaggatgaggaggttaggaagaaggtgaaagcaaagaacttgtttgagaattatgtttatga |
5446792 |
T |
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| Q |
116 |
aacgagggagagagtgaagaaacttgagaaggtagtggaggaaagtatagaatggtttgacagaaaccaattggcagaaattgatgagtttgaattcaag |
215 |
Q |
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| T |
5446793 |
aatgagggagagagtgaagaaacttgagaaggtagtggaggaaagtatagaatggtttgaaagaaaccaattggcagaaattgatgagtttgaattcaag |
5446892 |
T |
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| Q |
216 |
aagcaggagttggaaaatagtatgaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaagcaatgtaaaattgttt |
315 |
Q |
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| T |
5446893 |
aagcaggagttggaaaatagtatgaagtttctctaattgtgatgctaggtaaaagatttaagaacaagtttcttgagtgtgaagcaatgtaaaattgttt |
5446992 |
T |
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| Q |
316 |
gagctttgttaatcaattagtgtctatgaaattctc--gtctagtttatgcttaatttctatcctagagaaactaatggttatgcaataatgcaagaatt |
413 |
Q |
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| T |
5446993 |
gaactttgttaatcaattagtgtctatgaaattctcttgtctagtttatgcttaatttctatcctagagaaactaatggttatgcaataatgcaagaatt |
5447092 |
T |
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| Q |
414 |
gttataattacgttgtgatgatgtgtgtgcaatg |
447 |
Q |
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| T |
5447093 |
gttataattacgttgtgatgatgtgtgtgcaatg |
5447126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 5432040 - 5431986
Alignment:
| Q |
290 |
gagtgtgaagcaatgtaaaattgtttgagctttgttaatcaattagtgtctatga |
344 |
Q |
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| T |
5432040 |
gagtctgaagcaatgtaaaatagtttgagcttcattactcaattagtgtctatga |
5431986 |
T |
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