View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13747_low_7 (Length: 417)
Name: NF13747_low_7
Description: NF13747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13747_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 32506492 - 32506848
Alignment:
| Q |
17 |
gagaagaagaagaggaggaaatcttcgaagaaggaatcgaagaaacaatggtcgacacaagcagatgaatctagaggtgaaaaagagagacaaaacataa |
116 |
Q |
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| T |
32506492 |
gagaagaagaagaggaggaaatcttcgaagaaggaatcgaagaaacaatggtcgacacaagcagatgaatctagaggtgaaaaagagagacaaaacataa |
32506591 |
T |
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| Q |
117 |
atgaatcaggaagtagtaccaatagtgttgttgatcaagaagtgcaagatttgaagtggagtatctgcaatgtaacagctggtgctgattatattccatg |
216 |
Q |
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| T |
32506592 |
atgaatcaggtagtagtaccaatagtgttgttgatcaagaagtgcaagatttgaagtggagtatatgcaatgtaaccgctggtgctgattatattccatg |
32506691 |
T |
|
| Q |
217 |
tttggacaatgaaaagtatcttaagacttcacatagaaaacactatgaacatagagagaggcattgtcctgaggatgcaccaacttgccttgtctcactt |
316 |
Q |
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| T |
32506692 |
tttggacaatgaaaagtatcttaagacttcacatagaaaacactatgaacatagagagaggcattgtcctgaggatgcaccaacttgccttgtctcactt |
32506791 |
T |
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| Q |
317 |
cctcaaggatacaaaacacatgttccatggcctggtagtagagataaggttctaaat |
373 |
Q |
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| T |
32506792 |
cctcaaggatacaaaacacatgttccatggcctggtagtagagataaggttctaaat |
32506848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 39289125 - 39289198
Alignment:
| Q |
254 |
aaacactatgaacatagagagaggcattgtcctgaggatgcaccaacttgccttgtctcacttcctcaaggata |
327 |
Q |
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| T |
39289125 |
aaacactatgaacacagagaaaggcagtgtcctgaagatcctcctacctgccttgtcgctcttcctgaaggata |
39289198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 334
Target Start/End: Complemental strand, 8093824 - 8093669
Alignment:
| Q |
182 |
tgcaatgtaacagctggtgctgattatattccatgtttggacaatgaaaagtatcttaagacttcacat---agaaaacactatgaacatagagagaggc |
278 |
Q |
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|||||||| || || ||||||||||||||||| ||||||||||||||||| |||| | | || | | |||||||| ||||||||||||||| | |
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| T |
8093824 |
tgcaatgttactgcaggtgctgattatattccttgtttggacaatgaaaaagccattaaaaagttacgttccacaaaacactttgaacatagagagagac |
8093725 |
T |
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| Q |
279 |
attgtcctgaggatgcaccaacttgccttgtctcacttcctcaaggatacaaaaca |
334 |
Q |
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| T |
8093724 |
actgtcctgaggaaggacctacttgccttgtgccacttcctaatggttacaaaaca |
8093669 |
T |
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