View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13749_high_2 (Length: 440)

Name: NF13749_high_2
Description: NF13749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13749_high_2
NF13749_high_2
[»] chr5 (7 HSPs)
chr5 (9-425)||(12600382-12600797)
chr5 (130-233)||(15805040-15805143)
chr5 (234-425)||(15806119-15806322)
chr5 (9-55)||(12243123-12243169)
chr5 (63-102)||(8551620-8551659)
chr5 (63-104)||(16501992-16502033)
chr5 (63-100)||(34980813-34980850)
[»] chr8 (8 HSPs)
chr8 (130-234)||(3366077-3366181)
chr8 (232-350)||(3321108-3321226)
chr8 (248-371)||(3366997-3367120)
chr8 (371-425)||(3321258-3321312)
chr8 (142-209)||(3319670-3319737)
chr8 (371-421)||(3367136-3367186)
chr8 (306-354)||(3263116-3263164)
chr8 (63-99)||(4247725-4247761)
[»] chr3 (2 HSPs)
chr3 (63-99)||(6803406-6803442)
chr3 (298-370)||(6906371-6906443)
[»] scaffold0026 (1 HSPs)
scaffold0026 (62-101)||(1174-1213)
[»] chr7 (2 HSPs)
chr7 (63-101)||(28074106-28074144)
chr7 (62-99)||(33655313-33655350)
[»] chr6 (3 HSPs)
chr6 (63-101)||(9721141-9721179)
chr6 (63-101)||(23090998-23091036)
chr6 (62-98)||(21607050-21607086)
[»] chr4 (3 HSPs)
chr4 (63-101)||(44145776-44145814)
chr4 (63-104)||(54935070-54935111)
chr4 (65-101)||(34110803-34110839)
[»] scaffold0468 (1 HSPs)
scaffold0468 (298-371)||(6711-6784)


Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 12600797 - 12600382
Alignment:
Q  9 acatcatcaacactgacaggtggagccgaaagtagatcagaagcaggaagtgaagtgtgtttggatttaaggtttaggaggggaagagagggggagtgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12600797 acatcatcaacactgacaggtggagccgaaagtagatcagaagcaggaagtgaagtgtgtttggatttaaggtttaggaggggaagagagggg-agtgaa 12600699  T
Q  109 gtaaataactacaatctaaaagaaactgctgtttatctaatatatgatcaatctattgctaccgaagttgagccatcaagtactattgaagttgacccat 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12600698 gtacataactacaatctaaaagaaactgctgtttatctaatatatgatcaatctattgctaccgaagttgagccatcaagtactattgaagttgacccat 12600599  T
Q  209 caactagcacaaatattgagccattgagtgagatacttgtgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  12600598 caactagcacaaatattgagccattgagtgagatacttgtgtttgaaatgatttcgaatggtatgaaacgccagtgctttgttatatcttggttttcttc 12600499  T
Q  309 caaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtcaaggtaaatcctttccaatggactcgtctcgggtcatt 408  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12600498 caaacttgtttaatattactaagttttaagtcaataacaactagatttctttgataaaagtcaaggtaaatcctttccaatggactcgtctcgagtcatt 12600399  T
Q  409 agaaagacacttataat 425  Q
    |||||||||||||||||    
T  12600398 agaaagacacttataat 12600382  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 15805040 - 15805143
Alignment:
Q  130 gaaactgctgtttatctaatatatgatcaatctattgctaccgaagttgagccatcaagtactattgaagttgacccatcaactagcacaaatattgagc 229  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15805040 gaaactgcggtttatctaatatatgatcaatctatttctacggaagttgagccatcaagtactattgaagttgacccatcaactagcacaaatattgagc 15805139  T
Q  230 catt 233  Q
    ||||    
T  15805140 catt 15805143  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 234 - 425
Target Start/End: Original strand, 15806119 - 15806322
Alignment:
Q  234 gagtgagatacttgtgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttccaaacttgtttaatattactaagtt 333  Q
    |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||||| |||    
T  15806119 gagtgagata-ttgtgtttgaaatgattttgaatggtatgaaatgccagtgctttgttatatcttggttttcttccaaacttgttttatactactatgtt 15806217  T
Q  334 ttaagtgaataacaactagatctctttgataaaagtc----------------aaggtaaatcctttccaatggactcgtctcgggtcattagaaagaca 417  Q
    |||||| |||||||   |||| |||||||||||||||                |||||||||||||||||||| | ||||||| ||||||||||||||||    
T  15806218 ttaagtcaataaca---agatttctttgataaaagtcatcaggtattttgttgaaggtaaatcctttccaatgtattcgtctcaggtcattagaaagaca 15806314  T
Q  418 cttataat 425  Q
    ||||||||    
T  15806315 cttataat 15806322  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 12243169 - 12243123
Alignment:
Q  9 acatcatcaacactgacaggtggagccgaaagtagatcagaagcagg 55  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||    
T  12243169 acatcatcaacactaacaggtggagccaaaagtagatcagaagcagg 12243123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 8551659 - 8551620
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagaggggg 102  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8551659 gtgtgtttggattgaaggtttaggaggggaagagaggggg 8551620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 16502033 - 16501992
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagggggag 104  Q
    ||||||||||||| | |||||||||||| |||||||||||||    
T  16502033 gtgtgtttggattgagggtttaggagggaaagagagggggag 16501992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 34980813 - 34980850
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagaggg 100  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  34980813 gtgtgtttggattgaaggtttaggaggggaagggaggg 34980850  T

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Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 3366077 - 3366181
Alignment:
Q  130 gaaactgctgtttatctaatatatgatcaatctattgctaccgaagttgagccatcaagtactattgaagttgacccatcaactagcacaaatattgagc 229  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3366077 gaaactgctgtttatctaatatatgatcaatctattgctacggaagttgagccttcaagtactattgaagttgacccatcaactagcacaaatattgagc 3366176  T
Q  230 cattg 234  Q
    |||||    
T  3366177 cattg 3366181  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 232 - 350
Target Start/End: Original strand, 3321108 - 3321226
Alignment:
Q  232 ttgagtgagatacttgtgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttccaaacttgtttaatattactaag 331  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||   || ||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  3321108 ttgagtgagacacttctgtttgaaatgattttgaatggtatgaatcgccggtgctttgttatatcttggttttcttccaaacttgtttaatactactatg 3321207  T
Q  332 ttttaagtgaataacaact 350  Q
    ||||| || ||||||||||    
T  3321208 ttttacgtcaataacaact 3321226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 248 - 371
Target Start/End: Original strand, 3366997 - 3367120
Alignment:
Q  248 tgtttgaaatgatttcgaatggtatgaaataccagtgctttgttatatcgtggttttcttccaaacttgtttaatattactaagttttaagtgaataaca 347  Q
    ||||| ||||||||||||||||||||||   || ||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||| ||||| |    
T  3366997 tgtttcaaatgatttcgaatggtatgaagcgccggtgctttgttatatcttggtcttcttccaaacttgtttaatactaccaagttttaagtcaataata 3367096  T
Q  348 actagatctctttgataaaagtca 371  Q
    ||||||| ||  | ||||||||||    
T  3367097 actagatttccctaataaaagtca 3367120  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 3321258 - 3321312
Alignment:
Q  371 aaggtaaatcctttccaatggactcgtctcgggtcattagaaagacacttataat 425  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  3321258 aaggtaaatcctttccaatgggctcgtctcaggtcattagaaagacacttataat 3321312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 3319670 - 3319737
Alignment:
Q  142 tatctaatatatgatcaatctattgctaccgaagttgagccatcaagtactattgaagttgacccatc 209  Q
    ||||||||||||||||| || | |||||  ||| ||||| |||||| |||||| ||||||||||||||    
T  3319670 tatctaatatatgatcagtcaaatgctatggaaattgagtcatcaaatactatggaagttgacccatc 3319737  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 3367136 - 3367186
Alignment:
Q  371 aaggtaaatcctttccaatggactcgtctcgggtcattagaaagacactta 421  Q
    ||||||||||||||| ||||  |||||||| |||||||||||| |||||||    
T  3367136 aaggtaaatcctttcgaatgagctcgtctcaggtcattagaaaaacactta 3367186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 3263116 - 3263164
Alignment:
Q  306 ttccaaacttgtttaatattactaagttttaagtgaataacaactagat 354  Q
    |||||||||||||| ||||| ||| ||||||||| ||||||||| ||||    
T  3263116 ttccaaacttgtttgatattgctatgttttaagtcaataacaacgagat 3263164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 4247761 - 4247725
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagg 99  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  4247761 gtgtgtttggattgaaggtttaggaggggaagggagg 4247725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 6803442 - 6803406
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagg 99  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6803442 gtgtgtttggattgaaggtttaggaggggaagagagg 6803406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 6906371 - 6906443
Alignment:
Q  298 tggttttcttccaaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtc 370  Q
    |||||| ||||||||||||||||| ||| |||| |||||| |  | ||||||||||| || ||||||||||||    
T  6906371 tggtttccttccaaacttgtttaacattgctaaattttaattctaaaacaactagatttccttgataaaagtc 6906443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 1174 - 1213
Alignment:
Q  62 agtgtgtttggatttaaggtttaggaggggaagagagggg 101  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  1174 agtgtgtttggattgagggtttaggaggggaagagagggg 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 28074106 - 28074144
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagggg 101  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  28074106 gtgtgtttggattgaaggtttaggaggggaagggagggg 28074144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 33655350 - 33655313
Alignment:
Q  62 agtgtgtttggatttaaggtttaggaggggaagagagg 99  Q
    |||||||||||||| | |||||||||||||||||||||    
T  33655350 agtgtgtttggattgagggtttaggaggggaagagagg 33655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 9721141 - 9721179
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagggg 101  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  9721141 gtgtgtttggattgaaggtttaggaggggaagggagggg 9721179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 23090998 - 23091036
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagggg 101  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  23090998 gtgtgtttggattgaaggtttaggaggggaagggagggg 23091036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 21607086 - 21607050
Alignment:
Q  62 agtgtgtttggatttaaggtttaggaggggaagagag 98  Q
    |||||||||||||| | ||||||||||||||||||||    
T  21607086 agtgtgtttggattgagggtttaggaggggaagagag 21607050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 44145776 - 44145814
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagggg 101  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  44145776 gtgtgtttggattcaaggtttaggaggggaagggagggg 44145814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 54935070 - 54935111
Alignment:
Q  63 gtgtgtttggatttaaggtttaggaggggaagagagggggag 104  Q
    ||||||||||||| | |||||||||||||||| |||||||||    
T  54935070 gtgtgtttggattgagggtttaggaggggaagggagggggag 54935111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 34110803 - 34110839
Alignment:
Q  65 gtgtttggatttaaggtttaggaggggaagagagggg 101  Q
    ||||||||||| | |||||||||||||||||||||||    
T  34110803 gtgtttggattgagggtttaggaggggaagagagggg 34110839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 6711 - 6784
Alignment:
Q  298 tggttttcttccaaacttgtttaatattactaagttttaagtgaataacaactagatctctttgataaaagtca 371  Q
    |||||| ||||||||||||||||| ||| |||| |||||| |  | ||||||||||| || ||||| |||||||    
T  6711 tggtttccttccaaacttgtttaacattgctaaattttaattctaaaacaactagatttccttgatgaaagtca 6784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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