View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13749_low_4 (Length: 246)
Name: NF13749_low_4
Description: NF13749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13749_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 19039970 - 19039756
Alignment:
| Q |
23 |
ttaccacaatgtttcgtttatttgatatgttcatttgttggtatggtttagcaatgagtaggggcgaattagtgagttaaagcattactgcttgtggcgg |
122 |
Q |
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| T |
19039970 |
ttaccacaatgcttcgtttatttgatatgttaatttgttggtatgatttagcaataagtagaggcgaattagtgagtgaaagcattactgcttgtggcgg |
19039871 |
T |
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| Q |
123 |
tggctgatggctaactccgcccgatatttccgggcaggtttgggttttggcgggcagttgagtgcgatttcgactttgctgctgatgtaaggttggtgtg |
222 |
Q |
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| T |
19039870 |
tggctgatggcttactccgcccgagatttccgggcaggtttgggttttggcgggcaattgagtgcgatttcgac-ttgctgctgatgaaaggttggtgtg |
19039772 |
T |
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| Q |
223 |
gaagtggatgatgatg |
238 |
Q |
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| T |
19039771 |
gaagtggatgatgatg |
19039756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 18802969 - 18802740
Alignment:
| Q |
17 |
agaatcttaccacaatgtttcgtttatttgatatgttcatttgttggtatggtttagcaatgagtaggggcgaattagtgagttaaagcatt-------- |
108 |
Q |
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| T |
18802969 |
agaatcttaccacaatgctacgtttatttgatatgttaatttgttggtatggtttagcaataagtagaggcgaattagagagtgaaagcattcaggattt |
18802870 |
T |
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| Q |
109 |
----actgcttgtggcggtggctgatggctaactccgcccgatatttccgggcaggtttgggttttggcgggcagttgagtgcgatttcgactttgctgc |
204 |
Q |
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| T |
18802869 |
tgacactgcttgccgcggtggctgatggctaactccgcccgagatttctggacaggtttggcttttggcgggcagttgagtgcgatttcgac-atgctgc |
18802771 |
T |
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| Q |
205 |
tgatgtaaggttggtgtggaagtggatgatg |
235 |
Q |
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| T |
18802770 |
tgatgtaaggttggtgtggaagtggatgatg |
18802740 |
T |
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