View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1374_high_2 (Length: 366)
Name: NF1374_high_2
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 5181588 - 5181941
Alignment:
| Q |
1 |
tcaagaaatttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5181588 |
tcaagaaatttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagagctgtactacaagagaaa |
5181687 |
T |
|
| Q |
101 |
cagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaacatgattaaagtaattgagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5181688 |
cagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaacatgattaaagtaattgagtt |
5181787 |
T |
|
| Q |
201 |
aagggcatatctataatgagtttgggttatgatggcttatgattatgtgtttgcattaagttattttcttaataaagtatgttttgttaagtattgtatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5181788 |
aagggcatatctataatgagtttgggttatgatggcttatgattatgtgtttgcattaagttattttcttaataaagtatgttttgttaagtattgtatc |
5181887 |
T |
|
| Q |
301 |
attatgttggttgctttctggacaacttgaacttttatgctgtattgtttcctttg |
356 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5181888 |
attatgttggttgctt--tggacaacttgaacttttatgctgtattgtttcctttg |
5181941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 206 - 356
Target Start/End: Original strand, 5217273 - 5217421
Alignment:
| Q |
206 |
catatctataatgagtttgggttatgatggcttatgattatgtgtttgcattaagttattttcttaataaagtatgttttgttaagtattgtatcattat |
305 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| | |||||||||||||||||| |||||||| | |||| |
|
|
| T |
5217273 |
catatctataatgagtttgggttatgttggcttataattatgtgtttgcattaagttgttttatcaataaagtatgttttgttgagtattgtcttgttat |
5217372 |
T |
|
| Q |
306 |
gttggttgctttctggacaacttgaacttttatgctgtattgtttcctttg |
356 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||| ||| |||||||||||| |
|
|
| T |
5217373 |
gttggttgctt--tggataacttggacttttatgttgtgttgtttcctttg |
5217421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 5217213 - 5217266
Alignment:
| Q |
67 |
tgagggacatcaaagaactgtactacaagagaaacagtgttcatcttgaagatg |
120 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5217213 |
tgagggacatcaaagagctgtcctacaagagaaacagtgttcatcttgaagatg |
5217266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 5189556 - 5189661
Alignment:
| Q |
10 |
ttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaacagtgttca |
109 |
Q |
| |
|
||||||||||||| |||| ||| | ||| ||||||||||| |||||||| ||||| ||| |||||| ||| | | || ||||||||||| ||||| || |
|
|
| T |
5189556 |
ttggaaccgatgaggatgcactcacccgtgtgattgtcactagggctgagaaggacttggaggacataaaaaaggtctattacaagagaaatagtgtcca |
5189655 |
T |
|
| Q |
110 |
tcttga |
115 |
Q |
| |
|
||||| |
|
|
| T |
5189656 |
acttga |
5189661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 14173525 - 14173338
Alignment:
| Q |
10 |
ttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaacagtgttca |
109 |
Q |
| |
|
||||||||||||| |||||||||| || ||| | || ||||| || || || ||| ||| |||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
14173525 |
ttggaaccgatgaggatggactgactcgtgtggtcgtgacaagagccgagaaagatctgaaggacatcaaagagctgtattataagagaaacagtgttca |
14173426 |
T |
|
| Q |
110 |
tcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaacatgattaaagtaattga |
197 |
Q |
| |
|
||||| |||| ||| | ||||||| ||||| |||||||||||||||||||| || | |||||||| || |||| |||||||||| |
|
|
| T |
14173425 |
ccttgaggatgcagtggcaaaggaaatttcaggagactacaagaagttcatccttaccttgttggggaagcaagattgaagtaattga |
14173338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 14151857 - 14151688
Alignment:
| Q |
10 |
ttggaaccgatgaagatggactgagccgcgtgattgtcacaagggctgaaaaggatttgagggacatcaaagaactgtactacaagagaaacagtgttca |
109 |
Q |
| |
|
||||||||||||| |||||||| | ||| ||| | |||||||||| || || || |||| |||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
14151857 |
ttggaaccgatgaggatggactaacccgtgtggtgatcacaagggcggagaaagacttgaaggacatcaaagagctgtattacaagagaaatagtgttca |
14151758 |
T |
|
| Q |
110 |
tcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaa |
179 |
Q |
| |
|
||||| ||| ||| | ||||||| || || ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
14151757 |
ccttgaggatacagtggctaaggaaatttctggagactacaagaagttcctccttactcttttggggaaa |
14151688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 14166408 - 14166316
Alignment:
| Q |
87 |
tactacaagagaaacagtgttcatcttgaagatgaagtttccaaggaaacctcaggggactacaagaagttcatcctcactcttttggggaaa |
179 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||| || |||||||||| |||||||| ||||||||||| | |||||||| ||||||||| |
|
|
| T |
14166408 |
tactacaaaagaaacagtgttcttcttgagcatgttgtggccaaggaaacttcaggggattacaagaagtttcttctcactctcttggggaaa |
14166316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University