View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1374_high_5 (Length: 332)

Name: NF1374_high_5
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1374_high_5
NF1374_high_5
[»] chr4 (2 HSPs)
chr4 (1-310)||(25750430-25750739)
chr4 (33-107)||(45039353-45039427)
[»] chr5 (6 HSPs)
chr5 (29-114)||(32685121-32685206)
chr5 (29-107)||(8880873-8880951)
chr5 (34-112)||(5513405-5513483)
chr5 (30-112)||(13300037-13300119)
chr5 (30-112)||(13301733-13301815)
chr5 (53-112)||(39413583-39413642)
[»] chr2 (3 HSPs)
chr2 (29-113)||(5245909-5245993)
chr2 (34-113)||(43311955-43312034)
chr2 (32-113)||(27282520-27282601)
[»] chr6 (1 HSPs)
chr6 (29-113)||(5635424-5635508)
[»] chr1 (11 HSPs)
chr1 (33-113)||(34405774-34405854)
chr1 (33-107)||(2711831-2711905)
chr1 (34-112)||(17983382-17983460)
chr1 (34-107)||(34408911-34408984)
chr1 (32-113)||(31565457-31565538)
chr1 (32-107)||(2271865-2271940)
chr1 (30-107)||(2273266-2273343)
chr1 (32-107)||(5344201-5344276)
chr1 (33-86)||(34410353-34410406)
chr1 (33-88)||(25493208-25493263)
chr1 (34-107)||(42054556-42054629)
[»] scaffold0471 (1 HSPs)
scaffold0471 (33-107)||(1282-1356)
[»] chr8 (2 HSPs)
chr8 (33-107)||(36111409-36111483)
chr8 (33-89)||(10436528-10436584)
[»] chr7 (2 HSPs)
chr7 (34-112)||(41294149-41294227)
chr7 (33-107)||(45940023-45940097)
[»] chr3 (1 HSPs)
chr3 (33-107)||(43559542-43559616)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 25750430 - 25750739
Alignment:
Q  1 ataatatcaagactaatcgaaagattaccaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgca 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25750430 ataatatcaagactaatcgaaagattatcaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgca 25750529  T
Q  101 agggccactttttatcnnnnnnnnnacatattttgttctttgtagaaaacggatttcactggagcttttttgaagtacacaatatagatcatgaaacttt 200  Q
     |||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25750530 tgggccactttttatcattttttttacatattttgttctttatagaaaacggatttcactggagcttttttgaagtacacaatatagatcatgaaacttt 25750629  T
Q  201 gcatgctaattttgtatttgatgagnnnnnnnnnnnnnnnnnnnntcccagggagattgaaaatgagaaggtaactccaacaaaccatctttagcataga 300  Q
    ||||||||||||||||||| |||||                    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25750630 gcatgctaattttgtattttatgagaaagaaaaaacctgaaaaaatcccatggagattgaaaatgagaaggtaactccaacaaaccatctttagcataga 25750729  T
Q  301 tgcatctata 310  Q
    ||||||||||    
T  25750730 tgcatctata 25750739  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 45039353 - 45039427
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45039353 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 45039427  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 32685206 - 32685121
Alignment:
Q  29 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccacttttta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32685206 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccacttttta 32685121  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 8880951 - 8880873
Alignment:
Q  29 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8880951 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 8880873  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 5513483 - 5513405
Alignment:
Q  34 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccactttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  5513483 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaatttt 5513405  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 13300119 - 13300037
Alignment:
Q  30 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccactttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  13300119 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggccaatttt 13300037  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 13301815 - 13301733
Alignment:
Q  30 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccactttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  13301815 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggccaatttt 13301733  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 39413583 - 39413642
Alignment:
Q  53 ttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccactttt 112  Q
    |||||||||||||||| |||||||||||||||||||| || |||| || |||||| ||||    
T  39413583 ttagagcgtcgtgctattaacgcgaaggtcgcaggtttgagacctacatgggccaatttt 39413642  T

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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 5245909 - 5245993
Alignment:
Q  29 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccacttttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5245909 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccacttttt 5245993  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 43312034 - 43311955
Alignment:
Q  34 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccacttttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43312034 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccacttttt 43311955  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 27282520 - 27282601
Alignment:
Q  32 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccacttttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  27282520 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaattttt 27282601  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 5635508 - 5635424
Alignment:
Q  29 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccacttttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  5635508 caaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcaaaacctgcatgggccaattttt 5635424  T

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Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 34405774 - 34405854
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccacttttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  34405774 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccatttttt 34405854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 2711905 - 2711831
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2711905 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 2711831  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 17983460 - 17983382
Alignment:
Q  34 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccactttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  17983460 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaatttt 17983382  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 34408911 - 34408984
Alignment:
Q  34 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34408911 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 34408984  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 31565538 - 31565457
Alignment:
Q  32 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccacttttt 113  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  31565538 atggcccattagcttagttggttagagcgtcgtgctaataacgtgaaggtcgcaggttcgaaacctgcatgggccatttttt 31565457  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 2271865 - 2271940
Alignment:
Q  32 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||    
T  2271865 atggcccattagctcagttggttagagcgttgtgctaataacgcaaaggtcgcaggttcgaaacctgcatgggcca 2271940  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 2273266 - 2273343
Alignment:
Q  30 aaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||||| ||||||    
T  2273266 aaatggcccattagctcagttggttagagtgttgtgctaataacgcgaaggtcgcaggtttgagacctgcatgggcca 2273343  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 5344201 - 5344276
Alignment:
Q  32 atggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  5344201 atggcccattaacttagtgggttagagcgtcgtgctaataacgcgaaggttgcaggttcgagacctgcatgggcca 5344276  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 34410353 - 34410406
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcag 86  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34410353 tggcccattagctcagttggttagagtgtcgtgctaataacgcgaaggtcgcag 34410406  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 25493208 - 25493263
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggt 88  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25493208 tggcctattagctcagttggttagagcgtcgtgctaataacgcgaaggttgcaggt 25493263  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 42054556 - 42054629
Alignment:
Q  34 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||| ||||||||| |||||||||| || |||||||||| |  |||||||||||||||| ||||||| ||||||    
T  42054556 ggcctattagctcaattggttagagtgtggtgctaataaggtcaaggtcgcaggttcgagacctgcatgggcca 42054629  T

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Target: scaffold0471 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 1282 - 1356
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1282 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 1356  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 36111409 - 36111483
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36111409 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 36111483  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 10436528 - 10436584
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggtt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10436528 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggtt 10436584  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 112
Target Start/End: Original strand, 41294149 - 41294227
Alignment:
Q  34 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggccactttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  41294149 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaatttt 41294227  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 45940097 - 45940023
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45940097 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 45940023  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 43559542 - 43559616
Alignment:
Q  33 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcaagggcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43559542 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 43559616  T

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