View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374_low_1 (Length: 674)
Name: NF1374_low_1
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 132 - 566
Target Start/End: Complemental strand, 46034564 - 46034129
Alignment:
| Q |
132 |
ggtccatagagatagactaaagagttgagt-gcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgt |
230 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034564 |
ggtccatagagatagactaaagagttgagtagcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgt |
46034465 |
T |
|
| Q |
231 |
aattcgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtcttgggattcctcgtcgatatggcagaacgggcagctag |
330 |
Q |
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| T |
46034464 |
aatccgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtcttgggattcctcgtcgatatggcagaacgggcagctag |
46034365 |
T |
|
| Q |
331 |
tgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaac |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034364 |
tgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaac |
46034265 |
T |
|
| Q |
431 |
tttccaaatggccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaatgtctcttccttgagcagatggtatgctgatcgaacg |
530 |
Q |
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| T |
46034264 |
tttccaaatggccttctacataccggtgttacacgttactgatgcttcaggggtgcctcgtaatgtctcttccttgagcagatggtatgctgatcgaacg |
46034165 |
T |
|
| Q |
531 |
gagtattgaccattcctttcccaattccaaaccttc |
566 |
Q |
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| T |
46034164 |
gagtattgaccattcctttcccaattccaaaccttc |
46034129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 132 - 566
Target Start/End: Complemental strand, 39488442 - 39488007
Alignment:
| Q |
132 |
ggtccatagagatagactaaagagttgagt-gcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgt |
230 |
Q |
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|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488442 |
ggtccatagaaatagactaaagagttgagtagcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgt |
39488343 |
T |
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| Q |
231 |
aattcgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtcttgggattcctcgtcgatatggcagaacgggcagctag |
330 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488342 |
aatccgagcggagatgtaaaccagaacctttgagtttcttgacagtgcatgaagaggtggtcttgggattcctcgtcgatatggcagaacgggcagctag |
39488243 |
T |
|
| Q |
331 |
tgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaac |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488242 |
tgtctagagtaattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaac |
39488143 |
T |
|
| Q |
431 |
tttccaaatggccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaatgtctcttccttgagcagatggtatgctgatcgaacg |
530 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39488142 |
tttccaaatggccttccacataccggtgttacacgttactgatacttcaggggtgcctcgtaatgtctcttccttgagtagatggtatgctgatcgaacg |
39488043 |
T |
|
| Q |
531 |
gagtattgaccattcctttcccaattccaaaccttc |
566 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39488042 |
gagtattgaccattcctttcccaattccaaaccttc |
39488007 |
T |
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