View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374_low_12 (Length: 312)
Name: NF1374_low_12
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 312
Target Start/End: Original strand, 5181314 - 5181597
Alignment:
| Q |
29 |
aacatctgatgacttccagaagacattgcacacagctattcgttgcatcaatgaccacaaaaagtactatgagaaggttaggttcttatttcctttcata |
128 |
Q |
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| T |
5181314 |
aacatctgatgacttccagaagacattgcacacagctattcgttgcatcaatgaccacaaaaagtactatgagaaggttaggttcttatttcctttcata |
5181413 |
T |
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| Q |
129 |
gatcaaactgtcacactcttataaacttaatgattaaattaattaatcacttaattttctccatggttaccagatagaatgtcctacatgacaaaatcat |
228 |
Q |
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| T |
5181414 |
gatcaaactgtcacattcttataaacttagtgactaaattgataaatcacttaattttctccatggttaccagatagaatgtcctacatgacaaaatcat |
5181513 |
T |
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| Q |
229 |
tgagatttctcagttcttatacatgaactcactttgataattttccaaattcgtctaggttttgcgcaatgcgatcaagaaatt |
312 |
Q |
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| T |
5181514 |
tgagatttctcagttctaatacatgaactcactttgataattttccaaatttgtctaggttttgcgcaatgcgatcaagaaatt |
5181597 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 14173746 - 14173669
Alignment:
| Q |
31 |
catctgatgacttccagaagacattgcacacagctattcgttgcatcaatgaccacaaaaagtactatgagaaggtta |
108 |
Q |
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| T |
14173746 |
catctgatgattttcacaaggcattgcacactacgattcgatgcatcaatgaccataagaagtactatgaaaaggtta |
14173669 |
T |
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