View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374_low_14 (Length: 298)
Name: NF1374_low_14
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 7025253 - 7025079
Alignment:
| Q |
54 |
ttcttggaggagaaggcagaattgaagggtatggattcaattgcctttacatgatatatattgtgagaaggtcctctaannnnnnngatatggctatata |
153 |
Q |
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| T |
7025253 |
ttcttggaggagaaggcagaattgaagggtatggattcaattgcctttacatgatatatattgtgagaaggtcctctaatttttttgatatggctatata |
7025154 |
T |
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| Q |
154 |
atatatttgtccacaaaattttctgtcatcacactagtctcgcagattaaaatttgaccatgttagtcatccaacg |
229 |
Q |
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| T |
7025153 |
atatatttgtccacaaaattttctgtcatcacactagtctcgcagattaaaatttgacca-cttagtcatccaacg |
7025079 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 11127375 - 11127312
Alignment:
| Q |
54 |
ttcttggaggagaaggcagaattgaagggtatggattcaattgcctttacatgatatatattgt |
117 |
Q |
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| T |
11127375 |
ttcttggaggagaaggcagaattgaagggtatggattcaattccctttacatgatatatattgt |
11127312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 11127263 - 11127211
Alignment:
| Q |
140 |
gatatggctatataatatatttgtc-cacaaaattttctgtcatcacactagt |
191 |
Q |
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| T |
11127263 |
gatatggctatataatatatttgtctcataaaaaattctgtcgtcacactagt |
11127211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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