View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374_low_15 (Length: 271)
Name: NF1374_low_15
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 14539377 - 14539252
Alignment:
| Q |
39 |
gtttctaaaaattttgtgtaggcacaggcccacacataaagcaacatgcatatgtccctgattccaagtgaaaaaatttaatttaatgaaaatgctaata |
138 |
Q |
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| T |
14539377 |
gtttctaaaaattttgtgtaggcacaagcccacacataaagcaacatgcatttgtccctgattccaagtgaaaaaatttaatttaatgaaaatgctaata |
14539278 |
T |
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| Q |
139 |
aaagataacagcttttcacaggttct |
164 |
Q |
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| T |
14539277 |
aaagataatagcttttcacaggttct |
14539252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
| Q |
187 |
caagaagaaaggcattgatgatagtatataacaac |
221 |
Q |
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| T |
913263 |
caagaagaaaggcattgatgatagtatataacaac |
913229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 18250751 - 18250689
Alignment:
| Q |
39 |
gtttctaaaaattttgtgtaggcacaggcccacacataaagcaacatgcatatgtccctgatt |
101 |
Q |
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| T |
18250751 |
gtttctaaaaattttgtgtagtcacaagcccacacatatcccaacatgcatccgtccctgatt |
18250689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 31339792 - 31339746
Alignment:
| Q |
39 |
gtttctaaaaattttgtgtaggcacaggcccacacataaagcaacat |
85 |
Q |
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| T |
31339792 |
gtttctaaaaattttgtgtaggcacaagcccacacatgaaccaacat |
31339746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 7729627 - 7729591
Alignment:
| Q |
39 |
gtttctaaaaattttgtgtaggcacaggcccacacat |
75 |
Q |
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| T |
7729627 |
gtttctaaaatttttgtgtaggcacaagcccacacat |
7729591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 13029086 - 13029123
Alignment:
| Q |
39 |
gtttctaaaaattttgtgtaggcacaggcccacacata |
76 |
Q |
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| T |
13029086 |
gtttctaaaatttttgtgtaggcacaagcccacacata |
13029123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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