View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374_low_3 (Length: 457)
Name: NF1374_low_3
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 24 - 327
Target Start/End: Complemental strand, 11825635 - 11825332
Alignment:
| Q |
24 |
cttaattcccttcaattcgaatataagttttgtgtgattcggactagaaacgaactcagaaagtggttttgaagttgggttttctgctggaaaaatgctt |
123 |
Q |
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| T |
11825635 |
cttaattcccttcaattcgaatataagttttgtgtgattcggactagaaacgaactcggaaagtgcttttgaagttgggttttctgctggaaaaatgctt |
11825536 |
T |
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| Q |
124 |
acgggttttggcacgtattttgcggaataagctaaattgcgagtctaagtcaacggaatggttccagaactaaatatatgaattgggtaggcttgagttt |
223 |
Q |
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| T |
11825535 |
acgggttttggcgcgtattttgcggaataagttaaattgcgagtctaagtcaacggaatggttccagaactaaatatatgaattcggtaggcttgagttt |
11825436 |
T |
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| Q |
224 |
tacaaacgtattgattttttcgacacaaaatctaggttgtagcaatatgatccaataaatcaaccaaccaaatgaataatattagaatcctgtactaact |
323 |
Q |
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| T |
11825435 |
tacaaacgtgttgattttttcgacacaaaatctaggttgtagcaatatgatccaataaatcaaccaaccaaatgaataatattagaatcatgtactaact |
11825336 |
T |
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| Q |
324 |
aata |
327 |
Q |
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|||| |
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| T |
11825335 |
aata |
11825332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 11825286 - 11825231
Alignment:
| Q |
370 |
ttagtaaggtttttaactgccaaagatcgagtggcttgagatttgatatatgaaga |
425 |
Q |
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| T |
11825286 |
ttagtaaggttcttaactgccaaagattgagtggcttgagatttgatatatgaaga |
11825231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 10214699 - 10214749
Alignment:
| Q |
25 |
ttaattcccttcaattcgaatataagttttgtgtgattcggactagaaacg |
75 |
Q |
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| T |
10214699 |
ttaattcccttcaattcggatataaatttcgtatgattcggattagaaacg |
10214749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 14175611 - 14175701
Alignment:
| Q |
104 |
tttctgctggaaaaatgcttacgggttttggcacgtattttgcggaataagctaaattgcgagtctaagtcaacggaatggttccagaact |
194 |
Q |
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| T |
14175611 |
tttctgctggaaaaatgcttacgggttttgatgtagattttgcggaataagctatactgtgagttttagttgatggaatggctccagaact |
14175701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 17302872 - 17302930
Alignment:
| Q |
27 |
aattcccttcaattcgaatataagttttgtgtgattcggactagaaacgaactcagaaa |
85 |
Q |
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|||||||||||||||| |||||| |||||| ||||||||| |||||| ||| ||||||| |
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| T |
17302872 |
aattcccttcaattcggatataaattttgtatgattcggattagaaatgaattcagaaa |
17302930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 1456217 - 1456171
Alignment:
| Q |
27 |
aattcccttcaattcgaatataagttttgtgtgattcggactagaaa |
73 |
Q |
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|||||||||||||||| || |||| ||||||||||||||| |||||| |
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| T |
1456217 |
aattcccttcaattcggatttaagatttgtgtgattcggaatagaaa |
1456171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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