View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374_low_6 (Length: 423)
Name: NF1374_low_6
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 169 - 381
Target Start/End: Original strand, 28058472 - 28058687
Alignment:
| Q |
169 |
tacaagacagttttgtacggatgaattaggctaaatataaaaccaataatatgttatcaaatctagaagttgctttccttcatcac--tgtgctgctgtg |
266 |
Q |
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| T |
28058472 |
tacaagatagttttgtaaggatgaattaggctaaatataaaaccaataatatgttatcaaatctagaagttgctttccttcatcactgtgtgctgctgtg |
28058571 |
T |
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| Q |
267 |
tatgaagactggttagccataggaataaaatgctttgaaaatccatagttca-------aacgaaacaacaatgacatgctctaagctataaataatata |
359 |
Q |
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| T |
28058572 |
tatgaagactggttagccataggaat-aaatgctttgaaaatccatagttcaaattccgaacgaaacaacaatggca-----tcagttataaataatata |
28058665 |
T |
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| Q |
360 |
tagaattggaaatgtagcttgt |
381 |
Q |
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| T |
28058666 |
tagaattggaaatgtagcttgt |
28058687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 28057826 - 28057926
Alignment:
| Q |
29 |
aagaataaagaaaaaataattattaattgatgaatttagaaatttatgat-----atgaaatgaaactattaaagctctattctgcacatgtggagggga |
123 |
Q |
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| T |
28057826 |
aagaataaagaaaaaagaattattaattgatgaatttagaaatttatgatatgaaatgaaatgaaactattaaagctctattctgcacatgtggagggga |
28057925 |
T |
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| Q |
124 |
g |
124 |
Q |
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| T |
28057926 |
g |
28057926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 28057943 - 28057975
Alignment:
| Q |
139 |
ctgaatgttgaaagcaacaaacctgacaattac |
171 |
Q |
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| T |
28057943 |
ctgaatgttgaaagcaacaaacctgacaattac |
28057975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 28065115 - 28065143
Alignment:
| Q |
143 |
atgttgaaagcaacaaacctgacaattac |
171 |
Q |
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| T |
28065115 |
atgttgaaagcaacaaacctgacaattac |
28065143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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