View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1374_low_7 (Length: 413)
Name: NF1374_low_7
Description: NF1374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1374_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 6932549 - 6932818
Alignment:
| Q |
21 |
ccacagatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacataaaggttaataaaccctcttaaaaatggttagcaaagaa |
120 |
Q |
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| T |
6932549 |
ccactgatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacctaaaggttaataaaccttcttaaaaatggttagcaaagaa |
6932648 |
T |
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| Q |
121 |
atattgacaactactcaaataatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactt |
220 |
Q |
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| T |
6932649 |
atattaacaactactcaaattatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactt |
6932748 |
T |
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| Q |
221 |
tatgccgtctccttgttttctagtccacatctcgatcatctggtataagtataacaatgtgattaggaaa |
290 |
Q |
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| T |
6932749 |
tatgccgtctccttgttttctagtccacatctcgatcatctggtaaaagtataaaaatgtgattaggaaa |
6932818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 6485994 - 6485843
Alignment:
| Q |
140 |
taatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgtttt |
239 |
Q |
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| T |
6485994 |
taatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgtttt |
6485895 |
T |
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| Q |
240 |
ctagtccacatctcgatcatctggtataagtataacaatgtgattaggaaac |
291 |
Q |
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| T |
6485894 |
ctagtccacatctcgatcatctggtataagtataacaatgtgattaggaaac |
6485843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 6486061 - 6485990
Alignment:
| Q |
21 |
ccacagatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacataaaggttaata |
92 |
Q |
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|||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486061 |
ccactgatatatgttattcaccttcgagaaatcctagtataggctaataaacaggaaacataaaggttaata |
6485990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 6933295 - 6933330
Alignment:
| Q |
287 |
gaaacattgatgctttgttatctacaaaaattctat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6933295 |
gaaacattgatgctttgttatctacaaaaattctat |
6933330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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