View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-1 (Length: 212)
Name: NF1375-Insertion-1
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 25636357 - 25636519
Alignment:
| Q |
50 |
tttgaaaacaatcttataattttcctgtattttattgcatctattccactttcatcccgaatttgttatatacaatatatatcgtatagattgacaatca |
149 |
Q |
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| T |
25636357 |
tttgcaaataatcttataattttcatgtattttattgcatctattccactttcatcccgaaattgttatatacaatataaattgtgtagattgacaatca |
25636456 |
T |
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| Q |
150 |
aatcactgttgcttttagtcatattctagaacacataactttcctataagcagtatcgactca |
212 |
Q |
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| T |
25636457 |
aatcactgttgcttttagtcatattctagaacacataactttcctataagcaatatcgactca |
25636519 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 25620943 - 25620993
Alignment:
| Q |
56 |
aacaatcttataattttcctgtattttattgcatctattccactttcatcc |
106 |
Q |
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| T |
25620943 |
aacaatttaataattttcatgtattttattgcatgtattccacttccatcc |
25620993 |
T |
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