View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1375-Insertion-10 (Length: 751)

Name: NF1375-Insertion-10
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1375-Insertion-10
NF1375-Insertion-10
[»] scaffold0031 (3 HSPs)
scaffold0031 (151-751)||(43523-44123)
scaffold0031 (8-52)||(43437-43481)
scaffold0031 (67-97)||(43495-43525)
[»] chr4 (1 HSPs)
chr4 (311-711)||(13685206-13685606)
[»] chr1 (2 HSPs)
chr1 (311-687)||(49701638-49702014)
chr1 (454-523)||(41340254-41340323)
[»] chr5 (1 HSPs)
chr5 (311-711)||(19234801-19235201)
[»] chr2 (1 HSPs)
chr2 (327-598)||(11819042-11819313)
[»] chr6 (2 HSPs)
chr6 (458-676)||(23509427-23509645)
chr6 (327-461)||(23576534-23576668)
[»] chr7 (1 HSPs)
chr7 (601-709)||(33612851-33612959)


Alignment Details
Target: scaffold0031 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 151 - 751
Target Start/End: Original strand, 43523 - 44123
Alignment:
Q  151 gatatgaaraacaattttaattgattttcggcatgaaaatggaagcatgagagagcaacaaaacnnnnnnnnnnnnnnnn-atcaacagtcatatttaaa 249  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||                 |||||||||||||||||||    
T  43523 gatatgaagaacaattttaattgattttcggcatgaaaatggaagcatgagagagcaataaaacttttttttattttttttatcaacagtcatatttaaa 43622  T
Q  250 gttaaaaagtaaactataaataaccaacaaagtatatcgcatcatgaagatcttttgttctgactcgtgtttgttttcttgacaagggcgttcaatgttt 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |    
T  43623 gttaaaaagtaaactataaataaccaacaaagtatatcgcatcatgaagatcttgtgttctgactcgtgtttgtcttcttgacaaggacgttcaatgtct 43722  T
Q  350 tacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaagtttctcaaatgacagacttttcg 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  43723 tacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaagtttctcaaataacagacctttcg 43822  T
Q  450 agagctatccaacacgccttgtcttctactacttcggcaactgatactatttttctgttgttggaaactttgtccgttgaatttggtcaacgattggcat 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43823 agagctatccaacacgccttgtcttctactacttcggcaactgatact-tttttctgttgttggaaactttgtccgttgaatttgatcaacgattggcat 43921  T
Q  550 caacgctttcgaatatttggaagaaatggaatcttagagtttgggatgatgttacgaaggttagcgccatgattgttgtgcaagctacgcattttgtcgt 649  Q
    | ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||| | ||||||||| |||||||||||| |||||    
T  43922 ccacgctttcgaatatttgaaagaactggaatcttcgagtttgggatgatgttacggaggttagcgccacggttgttgtgcgagctacgcatttggtcgt 44021  T
Q  650 tgattgacagcttgctaatgttcccaccgtacttgatcgtattcctcagcagcaaccgcagcagcctgttggaggaggagatccaaccgtagttggcact 749  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||||||||||||    
T  44022 tgattgacagcttgctaatgttcccaccgtaattgatcgtattccccagcagcaaccgcggaagcctgttggaggaggagatccgaccgtagttggcact 44121  T
Q  750 tc 751  Q
    ||    
T  44122 tc 44123  T

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Target: scaffold0031; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 43437 - 43481
Alignment:
Q  8 atccaaactataagataagctaaatatgcaatttgttcagttatg 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43437 atccaaactataagataagctaaatatgcaatttgttcagttatg 43481  T

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Target: scaffold0031; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 43495 - 43525
Alignment:
Q  67 aaactaaaccaaaccatccatccaatacgat 97  Q
    |||||||||||||||||||||||||||||||    
T  43495 aaactaaaccaaaccatccatccaatacgat 43525  T

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Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 311 - 711
Target Start/End: Original strand, 13685206 - 13685606
Alignment:
Q  311 gactcgtgtttgttttcttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgc 410  Q
    |||||||||| || || || ||||||||||||||| |  |||||| ||||||||||||||||| ||||| | ||||||  ||||||||||||||||||||    
T  13685206 gactcgtgttcgtctttttaacaagggcgttcaatatcctacaaactgtgttagttgtccatcacatcatgaagatcttcctcatgtatttttcaattgc 13685305  T
Q  411 ctttttgatgtccaagtttctcaaatgacagacttttcgagagctatccaacacgccttgtcttctactacttcggcaactgatactatttttctgttgt 510  Q
    | ||||| |||||||||||  |||||||||| | ||| | |||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||    
T  13685306 ccttttgctgtccaagtttggcaaatgacaggcctttggggagctatccaacacactttgtcttctactacttcggcaactgttactatttttcttttgt 13685405  T
Q  511 tggaaactttgtccgttgaatttggtcaacgattggcatcaacgctttcgaatatttggaagaaatggaatcttagagtttgggatgatgttacgaaggt 610  Q
    ||||||||||||| |||||||||  |||||||||| |||||||| ||| || |||||||||| |  | |||||| ||||||||||| |||| ||| ||||    
T  13685406 tggaaactttgtctgttgaatttaatcaacgattgacatcaacgttttggagtatttggaagcaccgaaatcttcgagtttgggat-atgtcacggaggt 13685504  T
Q  611 tagcgccatgattgttgtgcaagctacgcattttgtcgttga-ttgacagcttgctaatgttcccaccgtacttgatcgtattcctcagcagcaaccgca 709  Q
     | |||||   |||||| || ||||| | |||| |||||||| ||| ||| ||||||||||| ||||||||  ||||| |||||| || || |||| |||    
T  13685505 aaccgccacagttgttgagcgagctaagaatttggtcgttgatttggcagtttgctaatgtttccaccgtagctgatcctattccccaacaacaactgca 13685604  T
Q  710 gc 711  Q
    ||    
T  13685605 gc 13685606  T

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Target: chr1 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 311 - 687
Target Start/End: Original strand, 49701638 - 49702014
Alignment:
Q  311 gactcgtgtttgttttcttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgc 410  Q
    |||||||||| || ||||| ||||||||||| |||||  |||||||||||||||||||| ||||||||| | ||| ||  ||||||| ||||||||||||    
T  49701638 gactcgtgttagtcttcttaacaagggcgtttaatgtcctacaaattgtgttagttgtcaatcgcatcatgaagaccttgctcatgtttttttcaattgc 49701737  T
Q  411 ctttttgatgtccaagtttctcaaatgacagacttttcgagagctatccaacacgccttgtcttctactacttcggcaactgatactatttttctgttgt 510  Q
    |   ||| |||||||||||  |||||||||  | ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  49701738 cccgttgttgtccaagtttggcaaatgacatgcctttggggagctatccaacacgccttgtcatctactacttcggcaactgatactatttttctgttgt 49701837  T
Q  511 tggaaactttgtccgttgaatttggtcaacgattggcatcaacgctttcgaatatttggaagaaatggaatcttagagtttgggatgatgttacgaaggt 610  Q
    |||||| ||||||||||||| ||   ||||| |||||||||||  ||| |   ||||| ||| | || | |||| |||||||||||||||||||| ||||    
T  49701838 tggaaaatttgtccgttgaagttaagcaacggttggcatcaacattttagcgcatttgaaagcattgaattcttcgagtttgggatgatgttacggaggt 49701937  T
Q  611 tagcgccatgattgttgtgcaagctacgcattttgtcgttgattgacagcttgctaatgttcccaccgtacttgatc 687  Q
     || |||| | |||||| |  || || |||||| ||||||||| || || |||||||||||||||||||| ||||||    
T  49701938 aagtgccacggttgttgagtgagataagcatttggtcgttgatagatagtttgctaatgttcccaccgtagttgatc 49702014  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 41340254 - 41340323
Alignment:
Q  454 ctatccaacacgccttgtcttctactacttcggcaactgatactatttttctgttgttggaaactttgtc 523  Q
    |||||||||||||| |||| |||||||||||||| |||||| | |  ||| |||||  ||||||||||||    
T  41340254 ctatccaacacgccatgtcatctactacttcggccactgatgccacatttttgttgccggaaactttgtc 41340323  T

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Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 311 - 711
Target Start/End: Original strand, 19234801 - 19235201
Alignment:
Q  311 gactcgtgtttgttttcttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgc 410  Q
    |||||||||| || |||||||||||||||||||||||  |||||| |||||||||| |||||||||| | | ||||||  ||||||||||||||||||||    
T  19234801 gactcgtgttcgtcttcttgacaagggcgttcaatgtcctacaaactgtgttagttatccatcgcataatgaagatcttgctcatgtatttttcaattgc 19234900  T
Q  411 ctttttgatgtccaagtttctcaaatgacagacttttcgagagctatccaacacgccttgtcttctactacttcggcaactgatactatttttctgttgt 510  Q
    ||||| | | || ||||||  ||||||||||   ||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||| | |    
T  19234901 cttttcgctatctaagtttggcaaatgacaggactttggggagctatccaacacgccttgtcttcaactgcttcggcaactgatactacctttctgctat 19235000  T
Q  511 tggaaactttgtccgttgaatttggtcaacgattggcatcaacgctttcgaatatttggaagaaatggaatcttagagtttgggatgatgttacgaaggt 610  Q
    |||||||||||||||||||||||  |||| |||||||||||||| ||| || |||||||||| |  | ||||||   |||||||||||||||| | ||||    
T  19235001 tggaaactttgtccgttgaatttaatcaatgattggcatcaacgttttggagtatttggaagcaccgaaatcttcatgtttgggatgatgttaaggaggt 19235100  T
Q  611 tagcgccatgattgttgtgcaagctacgcattttgtcgttgattgacagcttgctaatgttcccaccgtacttgatcgtattcctcagcagcaaccgcag 710  Q
     ||||| |   |||||| |  ||||| | |||| |||||||||||  ||  |||| ||||||||||||||  ||||| || ||| || || |||||||||    
T  19235101 aagcgctacagttgttgagagagctaagaatttggtcgttgattggaagtgtgctgatgttcccaccgtagatgatcctagtccccaacatcaaccgcag 19235200  T
Q  711 c 711  Q
    |    
T  19235201 c 19235201  T

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Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 327 - 598
Target Start/End: Complemental strand, 11819313 - 11819042
Alignment:
Q  327 cttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaag 426  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||| ||||| | || |||  ||||||||||||||||||||| ||||| ||||||||    
T  11819313 cttgacaagggcgttcaatgtcctacaaactgtgttagttgtccatcacatcatgaagttcttgctcatgtatttttcaattgcccttttgctgtccaag 11819214  T
Q  427 tttctcaaatgacagacttttcgagagctatccaacacgccttgtcttctactacttcggcaactgatactatttttctgttgttggaaactttgtccgt 526  Q
    |||  ||||||| || | ||| | ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||| ||||||||||| | |    
T  11819213 tttggcaaatgataggcctttggggagctatccaacacgccttgtctcctactatttcgacaactgatactatttttcttttgtcggaaactttgttcat 11819114  T
Q  527 tgaatttggtcaacgattggcatcaacgctttcgaatatttggaagaaatggaatcttagagtttgggatga 598  Q
    |||||||  ||||||||| ||||||||| ||| || ||||| |||| |  | |||||| |||||||||||||    
T  11819113 tgaatttaatcaacgattagcatcaacgttttggagtattttgaagcatcgaaatcttcgagtttgggatga 11819042  T

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Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 458 - 676
Target Start/End: Complemental strand, 23509645 - 23509427
Alignment:
Q  458 ccaacacgccttgtcttctactacttcggcaactgatactatttttctgttgttggaaactttgtccgttgaatttggtcaacgattggcatcaacgctt 557  Q
    |||||| ||||||||  |||||||||||| |||||||||||||||||| || ||||||| ||| || |||||||||  |||||||||  |||||||| ||    
T  23509645 ccaacatgccttgtcccctactacttcggaaactgatactatttttcttttattggaaagtttctctgttgaatttaatcaacgattaacatcaacgttt 23509546  T
Q  558 tcgaatatttggaagaaatggaatcttagagtttgggatgatgttacgaaggttagcgccatgattgttgtgcaagctacgcattttgtcgttgattgac 657  Q
    | || |||||||||| |  | |||||| |||||||||||||||||| | |||| ||||||| | |||||| || ||||| | |||| || ||||||||      
T  23509545 tggattatttggaagcatcgaaatcttcgagtttgggatgatgttatggaggtaagcgccacggttgttgagcgagctaagaatttggttgttgattgga 23509446  T
Q  658 agcttgctaatgttcccac 676  Q
    || ||||||||||||||||    
T  23509445 agtttgctaatgttcccac 23509427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 327 - 461
Target Start/End: Complemental strand, 23576668 - 23576534
Alignment:
Q  327 cttgacaagggcgttcaatgttttacaaattgtgttagttgtccatcgcatcacgtagatctcactcatgtatttttcaattgcctttttgatgtccaag 426  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||||| ||||| | ||||||  |||||||| |||||||||||| ||||| ||||||||    
T  23576668 cttgacaagggcgctcaatgtcctacaaactgtgttagttgtccatcacatcatgaagatcttgctcatgtacttttcaattgcccttttgctgtccaag 23576569  T
Q  427 tttctcaaatgacagacttttcgagagctatccaa 461  Q
    |||  |||||||||| | ||| | |||||||||||    
T  23576568 tttggcaaatgacaggccttttgggagctatccaa 23576534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 601 - 709
Target Start/End: Complemental strand, 33612959 - 33612851
Alignment:
Q  601 ttacgaaggttagcgccatgattgttgtgcaagctacgcattttgtcgttgattgacagcttgctaatgttcccaccgtacttgatcgtattcctcagca 700  Q
    ||||| |||| ||||||| | |||||  || ||||| |||||| |||||||| || ||| ||||||||| |||||||||  |||||| ||||||||| ||    
T  33612959 ttacggaggtaagcgccacggttgttaagcgagctaagcatttggtcgttgactggcaggttgctaatgctcccaccgtcgttgatcctattcctcaaca 33612860  T
Q  701 gcaaccgca 709  Q
    |||||||||    
T  33612859 gcaaccgca 33612851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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