View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-11 (Length: 276)
Name: NF1375-Insertion-11
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 56441747 - 56441546
Alignment:
| Q |
8 |
atatcagaattgcagtgcactttttccactgacacagcatgttctaatgaatggcagcatatttgtcatcatcataagttagttaaagccaaatgaaaga |
107 |
Q |
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| T |
56441747 |
atatcagaattacagtgcactttttccactgacacagcatgttctaatgaatggcagcatatttgtcatcatcataagttagttaaagccaaatgaaagg |
56441648 |
T |
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| Q |
108 |
tgaattacagcttttagtcttccaattttgacccatgtgcagagtagatgctagagtttcaaaaggtgcaatggagactaaagtctaaacctcaaataat |
207 |
Q |
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| T |
56441647 |
tgaattacagcttttagtcttccaattttgacccatgtgcagagtagatgctagagtttcaaaaggtgcaatggagactaaagtctaaacctcaaataat |
56441548 |
T |
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| Q |
208 |
gg |
209 |
Q |
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|| |
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| T |
56441547 |
gg |
56441546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 56441521 - 56441478
Alignment:
| Q |
233 |
attcaaatcattaaacatctgaacgatattgtcatgtatgatgt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56441521 |
attcaaatcattaaacatctgaacgatattgtcatgtatgatgt |
56441478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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