View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1375-Insertion-12 (Length: 252)

Name: NF1375-Insertion-12
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1375-Insertion-12
NF1375-Insertion-12
[»] chr3 (14 HSPs)
chr3 (6-252)||(2441209-2441455)
chr3 (24-128)||(988653-988757)
chr3 (18-125)||(996806-996913)
chr3 (18-125)||(1013196-1013303)
chr3 (18-98)||(2651150-2651230)
chr3 (29-88)||(1891797-1891856)
chr3 (14-125)||(2679149-2679260)
chr3 (15-81)||(803979-804045)
chr3 (36-125)||(2687056-2687145)
chr3 (29-126)||(2697457-2697554)
chr3 (19-151)||(1003726-1003858)
chr3 (19-151)||(1021723-1021855)
chr3 (15-81)||(44000827-44000893)
chr3 (17-126)||(13478852-13478961)
[»] chr4 (2 HSPs)
chr4 (18-126)||(22672849-22672957)
chr4 (14-127)||(20020499-20020612)
[»] chr5 (4 HSPs)
chr5 (19-128)||(1428462-1428571)
chr5 (71-123)||(20305160-20305212)
chr5 (71-123)||(20309564-20309616)
chr5 (71-123)||(20292300-20292352)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 2441209 - 2441455
Alignment:
Q  6 cagagatcctgtgtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaa 105  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2441209 cagagatcctgtgtaggctacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcgccaagaa 2441308  T
Q  106 gcacctcagcttgtcaaccacacgctatcttcactgcgtaagctacactgggttcccctatctgtacgttctcaagtcttacccactcgggcccgttctc 205  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2441309 gcacctcagcttgtcaaccacacgctgccttcactgcgtaagctacactgggttcccctatctgtacgttctcaagtcttacccactcgggcccgttctc 2441408  T
Q  206 aacaacttaaccaccaacatcacagagtatgagtattctccgtataa 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2441409 aacaacttaaccaccaacatcacagagtatgagtattctccgtataa 2441455  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 988653 - 988757
Alignment:
Q  24 tacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac 123  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| | |||| ||||||| | || |||||||| ||| |||||||    
T  988653 tacctgtgaagctcctccttcaactccgatgctcttgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaac 988752  T
Q  124 cacac 128  Q
    |||||    
T  988753 cacac 988757  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 996806 - 996913
Alignment:
Q  18 gtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagctt 117  Q
    ||||| |||| |||||||||||||| ||||||||||||  ||||||||| |||| |||| ||||| |  ||| ||||||  | ||||||||||| ||| |    
T  996806 gtaggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcat 996905  T
Q  118 gtcaacca 125  Q
    ||||||||    
T  996906 gtcaacca 996913  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 1013196 - 1013303
Alignment:
Q  18 gtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagctt 117  Q
    ||||| |||| |||||||||||||| ||||||||||||  ||||||||| |||| |||| ||||| |  ||| ||||||  | ||||||||||| ||| |    
T  1013196 gtaggctacccgtgaagctcctcctccagctccgatgcgcctgcaagtcctggagttctctaatctctaatcccaaatttgctaagaagcaccttagcat 1013295  T
Q  118 gtcaacca 125  Q
    ||||||||    
T  1013296 gtcaacca 1013303  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 2651230 - 2651150
Alignment:
Q  18 gtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattca 98  Q
    |||||||||| || ||||||||| |||| || |||||  |||||||| ||||||||||| | ||| |||||||||||||||    
T  2651230 gtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctcttatctccgatcacaaattca 2651150  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 1891856 - 1891797
Alignment:
Q  29 gtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgat 88  Q
    ||||||||||||||||| |||||||   |||||||||||||||||||| ||||| |||||    
T  1891856 gtgaagctcctccttcaactccgatctgtctgcaagtcatggaattctctaatctccgat 1891797  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 2679260 - 2679149
Alignment:
Q  14 ctgtgtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctca 113  Q
    |||| ||||||||  |||||  |||||||||| ||||||||  |||||||||||||||| ||| | ||| ||||||  |||||  | ||||||||||| |    
T  2679260 ctgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcacctta 2679161  T
Q  114 gcttgtcaacca 125  Q
    || |||||||||    
T  2679160 gcgtgtcaacca 2679149  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 804045 - 803979
Alignment:
Q  15 tgtgtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaat 81  Q
    ||||| |||||||||||||| || | ||||| ||||||||| | |||||||||||||||||| ||||    
T  804045 tgtgttggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaat 803979  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 2687145 - 2687056
Alignment:
Q  36 tcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaacca 125  Q
    |||||||||| ||||||||  |||||||||||||||| ||| | ||| ||||||  |||||  | ||||||||||| || ||||||||||    
T  2687145 tcctccttcaactccgatgtgtctgcaagtcatggaaatctctgatctccgatccaaaatttgctaagaagcaccttagattgtcaacca 2687056  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 2697554 - 2697457
Alignment:
Q  29 gtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaaccac 126  Q
    |||||| | ||||| || || |||||| |||| ||||||||||||||| ||||||| |||  ||  || |||||||||||||| ||| ||||||||||    
T  2697554 gtgaagttactcctacaacttcgatgcgtctgtaagtcatggaattctctaatcactgataccagttttaccaagaagcaccttagcatgtcaaccac 2697457  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 1003726 - 1003858
Alignment:
Q  19 taggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttg 118  Q
    ||||||||| ||||||||||||||||| || ||||||   |||||||||||||||| | ||||| || ||  ||||||    ||||||||||| ||  |     
T  1003726 taggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaatctccaataccaaatttcataagaagcaccttagtctt 1003825  T
Q  119 tcaaccacacgctatcttcactgcgtaagctac 151  Q
    |||||||||| |   |||||||| |||||||||    
T  1003826 tcaaccacacacacccttcactgtgtaagctac 1003858  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 1021723 - 1021855
Alignment:
Q  19 taggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttg 118  Q
    ||||||||| ||||||||||||||||| || ||||||   |||||||||||||||| | ||||| || ||  ||||||    ||||||||||| ||  |     
T  1021723 taggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaatctccaataccaaatttcataagaagcaccttagtctt 1021822  T
Q  119 tcaaccacacgctatcttcactgcgtaagctac 151  Q
    |||||||||| |   |||||||| |||||||||    
T  1021823 tcaaccacacacacccttcactgtgtaagctac 1021855  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 44000827 - 44000893
Alignment:
Q  15 tgtgtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaat 81  Q
    ||||||||||||| |||||| | ||||| || ||||||||| |||||||||| ||||| ||| ||||    
T  44000827 tgtgtaggttaccggtgaagatactcctgcaactccgatgcatctgcaagtcctggaaatctctaat 44000893  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 13478852 - 13478961
Alignment:
Q  17 tgtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagct 116  Q
    |||||| |||| ||||||||||||||||| || |||||  || | ||||  ||||||||||| ||||| |||| ||||||  |||| ||||| ||  ||     
T  13478852 tgtaggctacccgtgaagctcctccttcaacttcgatgtgtcagtaagttgtggaattcttttatcactgatcgcaaatttgccaacaagcatcttcgca 13478951  T
Q  117 tgtcaaccac 126  Q
    ||||||||||    
T  13478952 tgtcaaccac 13478961  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 22672957 - 22672849
Alignment:
Q  18 gtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagctt 117  Q
    |||||||||| |||||||||||||||||||||| ||||  ||||||||||||||||||| ||||| | |||| ||||||| | ||||||||||| ||| |    
T  22672957 gtaggttaccggtgaagctcctccttcagctccaatgcgcctgcaagtcatggaattctctaatctctgatcgcaaattcgctaagaagcaccttagcct 22672858  T
Q  118 gtcaaccac 126  Q
    |||||||||    
T  22672857 gtcaaccac 22672849  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 20020612 - 20020499
Alignment:
Q  14 ctgtgtaggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctca 113  Q
    |||||||||||||| ||||||||||||||||| || |||||  | || || |||||||||||| | ||| |  |||  |||||  |||||||||||||      
T  20020612 ctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaattctctcatctctcatcctaaattttccaagaagcaccttc 20020513  T
Q  114 gcttgtcaaccaca 127  Q
    || |||||||||||    
T  20020512 gcatgtcaaccaca 20020499  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 1428571 - 1428462
Alignment:
Q  19 taggttacctgtgaagctcctccttcagctccgatgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttg 118  Q
    |||| |||| ||||| ||||||||||| ||||||||| | |||||| |||| |||||| ||||||| |||| ||||||| |||||||||| || ||| ||    
T  1428571 taggctacccgtgaaactcctccttcaactccgatgcctttgcaaggcatgtaattctctaatcactgatctcaaattcgccaagaagcaacttagcatg 1428472  T
Q  119 tcaaccacac 128  Q
    ||||||||||    
T  1428471 tcaaccacac 1428462  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 20305160 - 20305212
Alignment:
Q  71 aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac 123  Q
    |||||| |||||||||||| ||||||| |||||||||||||  ||||||||||    
T  20305160 aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac 20305212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 20309564 - 20309616
Alignment:
Q  71 aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac 123  Q
    |||||| |||||||||||| ||||||| |||||||||||||  ||||||||||    
T  20309564 aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac 20309616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 20292300 - 20292352
Alignment:
Q  71 aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac 123  Q
    |||||| |||||||| ||| ||||||| |||||||||||||  ||||||||||    
T  20292300 aattctctaatcaccaatcccaaattcgccaagaagcaccttcgcttgtcaac 20292352  T

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