View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-13 (Length: 281)
Name: NF1375-Insertion-13
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 42454659 - 42454932
Alignment:
| Q |
8 |
cacggtacacatcatagcttgtaatcataccctcacctcactatatacgtgatgagccttccttttccatttattttgaacgacgttttagtatatagtt |
107 |
Q |
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| T |
42454659 |
cacggtacacatcatggcttgtaatcataccctcacctcactatatacgtgatgagccttccttttccatttattttgaacgacgttttagtatatagtt |
42454758 |
T |
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| Q |
108 |
taagagactttgatgttatatttttcttgtccataaaaattagtcacatgaacgaatttccaagtaaagtggaagttagattgtgtaagcacttgtagat |
207 |
Q |
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| T |
42454759 |
taagagactttgatgttatatttttcttgtccataaaaattagtcacatgaacgaatttccaagtaaagtggaagttagattgtgtaaacacttgtagat |
42454858 |
T |
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| Q |
208 |
ttattcattttgctaattttgattggttgatggataagttatccacaattcttcaaaagttaatatcgacctca |
281 |
Q |
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| T |
42454859 |
ttattcatttggctaattttgattggttgatggataagttatctacaattcttcaaaagttagtatagacctca |
42454932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 37758993 - 37758944
Alignment:
| Q |
217 |
ttgctaattttgattggttgatggataagttatccacaattcttcaaaag |
266 |
Q |
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| T |
37758993 |
ttgctcattttcattggttgatggataaattattcaccattcttcaaaag |
37758944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 42249062 - 42249018
Alignment:
| Q |
220 |
ctaattttgattggttgatggataagttatccacaattcttcaaa |
264 |
Q |
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| T |
42249062 |
ctaattttaattggttgttggataaattatccacaattcttcaaa |
42249018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 17863470 - 17863403
Alignment:
| Q |
197 |
cacttgtagatttattcattttgctaattttgattggttgatggataagttatccacaattcttcaaa |
264 |
Q |
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| T |
17863470 |
cacttgtaaatttactcatatagctaattttaattgattgttgaataaattatccacaattcttcaaa |
17863403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 3708782 - 3708901
Alignment:
| Q |
143 |
aaaattagtcacatgaacgaatttccaagtaaagtggaagttagattgtgtaagcacttgtagatttattcattttgctaattttgattggttgatggat |
242 |
Q |
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| T |
3708782 |
aaaattagtcacataagcaaatttataaataaagtggaaattagtttgtagaaccacttgcatatttactcatttagctaattttgattaattgatagat |
3708881 |
T |
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| Q |
243 |
aagttatccacaattcttcaaa |
264 |
Q |
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| T |
3708882 |
ca--aatccacaattcttcaaa |
3708901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 52347492 - 52347448
Alignment:
| Q |
220 |
ctaattttgattggttgatggataagttatccacaattcttcaaa |
264 |
Q |
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| T |
52347492 |
ctaattttgattggttgatgtgtaaatcatccacaattcttcaaa |
52347448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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