View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-14 (Length: 236)
Name: NF1375-Insertion-14
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-14 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 9126638 - 9126452
Alignment:
| Q |
42 |
tatttgataagattcatcagttttagnnnnnnngaaagagatgaatagcagggaacatagcaccaaaaatgtgaaaacgacgaaaacatttcataaagag |
141 |
Q |
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| T |
9126638 |
tatttgataagattcatcagttttagaaaaaaagaaagagatgaatagcagggaacatagcaccaaaaatgtgaaaacgacgaaaacatttcataaagag |
9126539 |
T |
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| Q |
142 |
ttgcagcagcccttttttgaaaacctgagcgctctaagaaccttctgcgtctaaatgaaacaaatgacatgaaaattgcaacaaagt |
228 |
Q |
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| T |
9126538 |
ttgcagcagcccttttttgaaaatctgagcgctctaagaaccttctgcgtctgaatgaaacaaatgacatgaaaattgtaacaaagt |
9126452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 9126732 - 9126689
Alignment:
| Q |
7 |
aaaaaggactattttttgggaactaagccatataatatttgata |
50 |
Q |
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| T |
9126732 |
aaaaagaactattttttgggaactaagccatataatatttgata |
9126689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 9162474 - 9162426
Alignment:
| Q |
171 |
cgctctaagaaccttctgcgtctaaatgaaacaaatgacatgaaaattg |
219 |
Q |
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| T |
9162474 |
cgctctaagaaccttctgcgcctgaatgaaacaaatgatataaaaattg |
9162426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 3355637 - 3355675
Alignment:
| Q |
89 |
gcagggaacatagcaccaaaaatgtgaaaacgacgaaaa |
127 |
Q |
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| T |
3355637 |
gcagggaacatagtaccaaaaatgtgaaaacgacaaaaa |
3355675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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