View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-16 (Length: 297)
Name: NF1375-Insertion-16
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 54713086 - 54713384
Alignment:
| Q |
6 |
caagacattcatcaaaactccaccatcctctacaatcagcttcaaagaattcctccatcctctaaaatcagttccacaccaagctaggggcggcgggggt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54713086 |
caagacattcatcaaaactccaccatcctctacaatcagcttcaaagaattcctccatcctctaaaatcagttccacaccaagctaggggcggcgggggt |
54713185 |
T |
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| Q |
106 |
gagtaggagaagaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagag |
205 |
Q |
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| T |
54713186 |
gagtaggagaagaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatgtatggtggtggggagag |
54713285 |
T |
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| Q |
206 |
agaagagatccgtttttagagaagctgagggttgggacttaa------nnnnnnnngtcttcttttatgagatggcac-tttcataagattattttata |
297 |
Q |
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| T |
54713286 |
agaagagatccgtttttagagaagatgagggttgggacttaattttttttttttttgtcttcttttatgagatggcacttttcataagattattttata |
54713384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 32972079 - 32971790
Alignment:
| Q |
6 |
caagacattcatcaaaactccaccatcctctacaatcagcttcaaagaattcctccatcctctaaaatcagttccacaccaagctaggggcggcgggggt |
105 |
Q |
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| T |
32972079 |
caagacattcatcaaaactccaccatcctctacgatcagcttcaaagagttcctccatcctctaaaatcagttccacaccaagctaggggcggcgggggt |
32971980 |
T |
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| Q |
106 |
gagtaggagaagaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagag |
205 |
Q |
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| T |
32971979 |
gagtaggggaagaaagagagagttgagttgttgaaatcggagttggggcggaggggtggtcggagtttgcggcggtggcagtggatggcggttgggagag |
32971880 |
T |
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| Q |
206 |
agaa--gagatccgtttttagagaagctgagggttgggacttaa-nnnnnnnngtcttcttttatgagatggcactttcataagattattt |
293 |
Q |
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| T |
32971879 |
agaagagagatctgtttttagagaagc-aagggttgggacttaatttttttttgtcttcttttatgagctggcactttcataagattattt |
32971790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 41664884 - 41665126
Alignment:
| Q |
6 |
caagacattcatcaaaactccaccatcctctacaatcagcttcaaagaattcctccatcctctaaaatcagttccacaccaagctaggggcggcgggggt |
105 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
41664884 |
caagacattcatcgaaactccaccatcctctacaatcagcttcaaagagttcctccatcctctaaaatcagttccacaccaagccaggggtggcgggggt |
41664983 |
T |
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| Q |
106 |
gagtaggagaagaaagagagagttgagttgttgaaatcggagctgggacgaaaggatggtcggagtttgcggcgatggcaatggatggtggtggggagag |
205 |
Q |
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| T |
41664984 |
gagtaggagaagaaagagagagttgagttgttgaaatcggagctggggcggaggggtggtcggagtttgcggcagtggcagtggatggcggtggggagag |
41665083 |
T |
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| Q |
206 |
aga-agagatccgtttttagagaagctgagggttgggacttaa |
247 |
Q |
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| T |
41665084 |
aaagagagatctgtttttagagaagcggagggttaggacttaa |
41665126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 41665143 - 41665184
Alignment:
| Q |
256 |
gtcttcttttatgagatggcactttcataagattattttata |
297 |
Q |
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| T |
41665143 |
gtcttcttttatgagctgacactttcataagattattttata |
41665184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 49309512 - 49309577
Alignment:
| Q |
72 |
atcagttccacaccaagcta--ggggcggcgggggtgagtaggagaagaaagagagagttgagttg |
135 |
Q |
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| T |
49309512 |
atcagttccacaccgaggtatgggggcagcggaggtgagtcggagaagaaagagagagttaagttg |
49309577 |
T |
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