View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-2 (Length: 376)
Name: NF1375-Insertion-2
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 376
Target Start/End: Complemental strand, 43989691 - 43989322
Alignment:
| Q |
7 |
actcaactggtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgacaannnnnnnct |
106 |
Q |
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| T |
43989691 |
actcaactggtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgacaatttttttct |
43989592 |
T |
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| Q |
107 |
attgtaaatcgaccacccggtaaacaaacccaaggagacatgtttcttaaaagatacttcttatgtaagtaacccgtgtctcagcnnnnnnngaattcct |
206 |
Q |
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| T |
43989591 |
attgtaaatcgactacccggtaaacaaacccaaggagacatgtttcttaaaagatacttcttatgtaagtaacccgtgtctcagcaaaaaaagaattcct |
43989492 |
T |
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| Q |
207 |
catgttttagagcccattgtcatattgtcctcggttgccttgttctccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttctc |
306 |
Q |
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| T |
43989491 |
catgttttagagcccattgtcatattgtcctcggttgccttgttctccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttctc |
43989392 |
T |
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| Q |
307 |
tgttcaattcgttctctttcgccactgtccatggtcactatgtctgcgccgtccactccttctttgtcgc |
376 |
Q |
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| T |
43989391 |
tgttcaattcgttctctttcgccactgtccatggtcactgtgtctgcgccgtccactccttctttgtcgc |
43989322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 43918528 - 43918590
Alignment:
| Q |
242 |
tgccttgttctccttctttgacttacgatcatgtcgtcccacaccttttccttattcttcttc |
304 |
Q |
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| T |
43918528 |
tgccttcttctcctccttcgacctacgatcatgtcgtcccatgccttctccttattcttcttc |
43918590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 8831116 - 8831036
Alignment:
| Q |
16 |
gtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgtcaagaaccaaaaacaataggttcaggtgaca |
96 |
Q |
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|||||| ||| |||||||||| ||||| |||||||||| || ||| |||||||||||||| ||||||||| || |||||| |
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| T |
8831116 |
gtaaatcacccgttgtttattggttcgggtcaaaaccagattgaaattgtcaagaaccaaacacaataggtacatgtgaca |
8831036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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