View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1375-Insertion-3 (Length: 739)
Name: NF1375-Insertion-3
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-3 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 30 - 739
Target Start/End: Complemental strand, 16829008 - 16828300
Alignment:
| Q |
30 |
ctaaaataagacaattttttcgagggattaaatgaaaattatcaaaaatagaaacttatttaagcctattaagtagtcttaaataaatgtgcgacctagt |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16829008 |
ctaaaataagacaattttttcgagggactaaatgaaaattatcaaaaatagaaacttatttaagcctattaaatagtcttaaataaatgtgcgacctagt |
16828909 |
T |
|
| Q |
130 |
tgcggccataaaggtttttgatgatgcccaaatcgcaatgcagttgtgactagggctgcattaacacatttgattgcannnnnnnnncttcaatatcaaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16828908 |
cgcggccataaaggtttttgatgatgcccaaatcgcaatgcagttgtgactagggctgcattaacacatttgattgcagtttttctt-ttcaatatcaaa |
16828810 |
T |
|
| Q |
230 |
catcgcgacaagaccataacctaactttgaccgttatttaaaaccctaattaagaataaacttgtgattaaaaatgtaccctaaaattacctttaaaatg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16828809 |
catcgcgacaagaccataacctaactttgaccgttattaaaaaccctaattaagaataaacttgtgattaaaaatgtaccctaaaattacctttaaaatg |
16828710 |
T |
|
| Q |
330 |
gttgtaagtggacttcctgaaggtaccttattcctgtaagtagttgaaccagccaagaacactggaatagacacaaatatagtaatagtagaaattgcaa |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16828709 |
gttgtaagtggacttcctgaaggtaccttattcctgtaagttgttgaaccagccaagaacactggaatagacacaaatatagtgatagtagatattgcaa |
16828610 |
T |
|
| Q |
430 |
aaccccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaagt |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16828609 |
aaccccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaagt |
16828510 |
T |
|
| Q |
530 |
tgatctttgcttccttccatttggtgtagtttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactaga |
629 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16828509 |
tgatctttgcttccttccatttggtgtagcttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactaga |
16828410 |
T |
|
| Q |
630 |
tatagaccagcaaataacattgctgcttttccaccattaacttcttcacatggagtggattcattacattttgttggttttagtgaaggtacatgagctt |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16828409 |
tatagaccagcaaataacattgctgcttttccaccattaacttcttcacatggagtggattcattacattttgttggttttagtgaaggtacatgagctt |
16828310 |
T |
|
| Q |
730 |
gtattgttag |
739 |
Q |
| |
|
|||||||||| |
|
|
| T |
16828309 |
gtattgttag |
16828300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 316 - 673
Target Start/End: Original strand, 25171664 - 25172021
Alignment:
| Q |
316 |
ttacctttaaaatggttgtaagtggacttcctgaaggtaccttattcctgtaagtagttgaaccagccaagaacactggaatagacacaaatatagtaat |
415 |
Q |
| |
|
||||||| |||||||||||||| |||||||| | ||| | ||||||||| || |||| ||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
25171664 |
ttaccttaaaaatggttgtaagaggacttccagtaggaatcttattcctatatttagtagaaccagccaagaacacaggaatagaaacaaatatgctaat |
25171763 |
T |
|
| Q |
416 |
agtagaaattgcaaaaccccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaag |
515 |
Q |
| |
|
||||| |||| |||||||||||| ||| || |||||||||||| ||| ||||||||||||||||||||||| |||||||||| || | ||| | ||| |
|
|
| T |
25171764 |
agtagcaattccaaaaccccatttccacccaatattatcttcaatccacacaacaaaagtaactgcaataagtgcaccacatgctaagctaaagatgaag |
25171863 |
T |
|
| Q |
516 |
tagttgaagaaagttgatctttgcttccttccatttggtgtagtttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactc |
615 |
Q |
| |
|
||||| |||||||||||||| | ||| |||||| | | ||||||||||| ||| ||||||| || || ||||| || ||||||||||||| |
|
|
| T |
25171864 |
tagttaaagaaagttgatctattctttcttccagatacattgtcctcatcaaattgctcagcaccatgtggtgccaatgatcccttaattcctccaactc |
25171963 |
T |
|
| Q |
616 |
caagtgctactagatatagaccagcaaataacattgctgcttttccaccattaacttc |
673 |
Q |
| |
|
||||||| ||||| ||||| ||| |||||| |||| ||||||| |||||| |||||| |
|
|
| T |
25171964 |
caagtgcaactaggtatagtccaccaaatagcattaatgcttttgcaccatgaacttc |
25172021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 429 - 664
Target Start/End: Complemental strand, 44611527 - 44611292
Alignment:
| Q |
429 |
aaaccccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaag |
528 |
Q |
| |
|
|||||||| | ||| ||||| || ||||||| ||| || |||||||||||||||| | ||||||||||| || | || ||||||||||| || || |
|
|
| T |
44611527 |
aaaccccactgccatcctttgttgtcttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaaaaatt |
44611428 |
T |
|
| Q |
529 |
ttgatctttgcttccttccatttggtgtagtttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactag |
628 |
Q |
| |
|
|| |||| ||| ||||| | ||||||||| ||||||||||||||| | |||||| || | || ||||||||||| || ||||||||||| || || |
|
|
| T |
44611427 |
cagaccttttctttcttccttctggtgtagtctcatcaaattgttcagctccatgaggaggaagtgaaccttttattccccctactccaagtgccacaag |
44611328 |
T |
|
| Q |
629 |
atatagaccagcaaataacattgctgcttttccacc |
664 |
Q |
| |
|
||| || || ||||||| ||| |||||||||||||| |
|
|
| T |
44611327 |
atagaggcctgcaaatagcatagctgcttttccacc |
44611292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University