View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1375-Insertion-4 (Length: 479)

Name: NF1375-Insertion-4
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1375-Insertion-4
NF1375-Insertion-4
[»] chr2 (3 HSPs)
chr2 (7-464)||(34372304-34372764)
chr2 (145-237)||(34319832-34319924)
chr2 (196-239)||(29097886-29097929)
[»] chr6 (2 HSPs)
chr6 (145-237)||(6922651-6922743)
chr6 (129-227)||(7326332-7326430)
[»] chr1 (1 HSPs)
chr1 (296-400)||(42059836-42059940)
[»] scaffold0166 (1 HSPs)
scaffold0166 (137-236)||(35857-35956)
[»] chr5 (1 HSPs)
chr5 (137-236)||(24793474-24793573)
[»] chr8 (1 HSPs)
chr8 (188-237)||(12959706-12959755)
[»] chr7 (1 HSPs)
chr7 (176-237)||(32958488-32958549)
[»] chr4 (3 HSPs)
chr4 (187-239)||(31351732-31351784)
chr4 (145-237)||(35010400-35010492)
chr4 (189-237)||(35130672-35130720)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 464
Target Start/End: Complemental strand, 34372764 - 34372304
Alignment:
Q  7 acttacatcgttgaaatcaacacacagtaagatgtgttgtcattcgaagatggatgtgttatttaatagacaagtttttatagcggagataaactgnnnn 106  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||        
T  34372764 acttacatcattgaaatcaacacacagtaagatgtgtggtcattggaagatggatgtgttatctaatagacaagtttttatagcggagataaattgtttt 34372665  T
Q  107 nnnnnnnnn--gattaagtagttggtggttaaattcgcatacattatatgtagagacgtgggaaatctagagttcgaattttgacccctgcacaaattat 204  Q
               | ||||||| |  ||| ||| ||||||||||||||||| | |||| |||| |||||||  | || ||| | |||||||||| |||||||    
T  34372664 tttcttttttgggttaagtaatcagtgattagattcgcatacattatatatggagaagtggaaaatctaaggctcaaatctcgacccctgcataaattat 34372565  T
Q  205 tccggatagctaccaaccgaactacacttacggaagaaattgttttgtatagagtaaaattatactatttaacattaaagaaactaactcttatagtgca 304  Q
    | ||||||  || |||  || ||||||||||| || |||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  34372564 ttcggataattatcaattgagctacacttacgaaacaaattgttttatatagagtaaaattatactatttaacatgaaggaaactaactcttatagtgca 34372465  T
Q  305 tgaacgacatgtgtcttctaactaatttaaaaaacctcttcaaaaagtttctcctattcttttgaataatgaacattgataacatcccaagtataacca- 403  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||     
T  34372464 tgaacgacatgtgtcttctaactaatttagaaaacctcttcaaaaagtttcttctattcttttgaatactgaacattgataacatcccaagtataaccac 34372365  T
Q  404 tattattgaaacttctttttcatttctcctcaagagtatttcttttcgaatccttctacac 464  Q
      ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  34372364 ctttattgaaatttttttttcatttctcctcaagagtatttcttttcgaatccttctacac 34372304  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 34319832 - 34319924
Alignment:
Q  145 acattatatgtagagacgtgggaaatctagagttcgaattttgacccctgcacaaattattccggatagctaccaaccgaactacacttacgg 237  Q
    ||||||| |||||||| ||| | |||| || ||| ||||  || |||||||||||||||| || ||||||||||||| ||  |||||||||||    
T  34319832 acattatgtgtagagaagtgaggaatccagggttagaatcctggcccctgcacaaattatccctgatagctaccaactgaggtacacttacgg 34319924  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 29097929 - 29097886
Alignment:
Q  196 acaaattattccggatagctaccaaccgaactacacttacggaa 239  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||    
T  29097929 acaaattattcctgatagttaccaactgaactacacttacggaa 29097886  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 6922651 - 6922743
Alignment:
Q  145 acattatatgtagagacgtgggaaatctagagttcgaattttgacccctgcacaaattattccggatagctaccaaccgaactacacttacgg 237  Q
    ||||||||||| |||| ||||| ||||| ||||| |||    ||||||||||||||||||||  | ||||||||||| |||||||||||||||    
T  6922651 acattatatgtggagaagtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactgaactacacttacgg 6922743  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 7326332 - 7326430
Alignment:
Q  129 gtggttaaattcgcatacattatatgtagagacgtgggaaatctagagttcgaattttgacccctgcacaaattattccggatagctaccaaccgaact 227  Q
    |||| ||||||| || ||||||| ||| |||| ||||| ||||||| |||||||    ||||||||| |||||||| || | ||||||||||| |||||    
T  7326332 gtggctaaattcacacacattatgtgtggagaagtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagctaccaactgaact 7326430  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 400
Target Start/End: Original strand, 42059836 - 42059940
Alignment:
Q  296 tatagtgcatgaacgacatgtgtcttctaactaatttaaaaaacctcttcaaaaagtttctcctattcttttgaataatgaacattgataacatcccaag 395  Q
    |||||||||||||||| |||| | |||||||||| ||||||||| ||||| | | |||||| |||||||| |||||  ||||  | ||||||||| |||     
T  42059836 tatagtgcatgaacgatatgtttattctaactaacttaaaaaacttcttccacaggtttcttctattcttgtgaattttgaatgtggataacatctcaaa 42059935  T
Q  396 tataa 400  Q
    |||||    
T  42059936 tataa 42059940  T

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Target: scaffold0166 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 35956 - 35857
Alignment:
Q  137 attcgcatacattatatgtagagacgtgggaaatctagagttcgaattttgacccctgcacaaattattccggatagctaccaaccgaactacacttacg 236  Q
    |||| |||||||||| ||||||||  |||||||||| | ||||| |    ||||||||||||||||||  | ||||||||||||| |||||| |||||||    
T  35956 attcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaactgaactatacttacg 35857  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 24793573 - 24793474
Alignment:
Q  137 attcgcatacattatatgtagagacgtgggaaatctagagttcgaattttgacccctgcacaaattattccggatagctaccaaccgaactacacttacg 236  Q
    |||| |||||||||| ||||||||  |||||||||| | ||||| |    ||||||||||||||||||  | ||||||||||||| |||||| |||||||    
T  24793573 attcacatacattatgtgtagagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagctaccaactgaactatacttacg 24793474  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 12959755 - 12959706
Alignment:
Q  188 acccctgcacaaattattccggatagctaccaaccgaactacacttacgg 237  Q
    |||||||||||| |||| || ||||||||||||| || ||||||||||||    
T  12959755 acccctgcacaagttatccctgatagctaccaactgagctacacttacgg 12959706  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 32958549 - 32958488
Alignment:
Q  176 gttcgaattttgacccctgcacaaattattccggatagctaccaaccgaactacacttacgg 237  Q
    ||||||| | |||| |||||||||||||||   | |||||||||||||| ||||||||||||    
T  32958549 gttcgaactctgactcctgcacaaattatttttggtagctaccaaccgagctacacttacgg 32958488  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 31351732 - 31351784
Alignment:
Q  187 gacccctgcacaaattattccggatagctaccaaccgaactacacttacggaa 239  Q
    ||||||||||||||||||  | | ||||||||||| || ||||||||||||||    
T  31351732 gacccctgcacaaattatctctggtagctaccaactgagctacacttacggaa 31351784  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 35010400 - 35010492
Alignment:
Q  145 acattatatgtagagacgtgggaaatctagagttcgaattttgacccctgcacaaattattccggatagctaccaaccgaactacacttacgg 237  Q
    ||||||| ||| |||| ||||||||||  |||||||||    ||| ||||||||||||||  | ||||||||||||| || ||| ||||||||    
T  35010400 acattatgtgtggagaagtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactgagctaaacttacgg 35010492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 35130672 - 35130720
Alignment:
Q  189 cccctgcacaaattattccggatagctaccaaccgaactacacttacgg 237  Q
    ||||||||||||||||  | | ||||||||||| |||||||||||||||    
T  35130672 cccctgcacaaattatctctggtagctaccaactgaactacacttacgg 35130720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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