View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1375-Insertion-5 (Length: 486)

Name: NF1375-Insertion-5
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1375-Insertion-5
NF1375-Insertion-5
[»] chr7 (24 HSPs)
chr7 (191-412)||(42678994-42679217)
chr7 (191-412)||(3934469-3934692)
chr7 (8-178)||(8414572-8414736)
chr7 (8-175)||(3052145-3052307)
chr7 (41-178)||(36464332-36464469)
chr7 (41-175)||(19786704-19786838)
chr7 (8-175)||(8733578-8733740)
chr7 (41-175)||(19789010-19789144)
chr7 (8-175)||(3932656-3932817)
chr7 (8-175)||(3934895-3935056)
chr7 (325-412)||(16497284-16497370)
chr7 (419-486)||(8733377-8733444)
chr7 (206-332)||(19788635-19788764)
chr7 (206-292)||(16533505-16533591)
chr7 (206-292)||(16632071-16632157)
chr7 (419-486)||(19787017-19787084)
chr7 (354-412)||(8414936-8414994)
chr7 (419-480)||(42680672-42680733)
chr7 (42-116)||(28610350-28610424)
chr7 (409-486)||(16535017-16535094)
chr7 (409-486)||(16630568-16630645)
chr7 (42-116)||(8731285-8731359)
chr7 (409-484)||(3932941-3933016)
chr7 (41-116)||(42678670-42678745)
[»] chr4 (16 HSPs)
chr4 (191-412)||(42468855-42469078)
chr4 (8-175)||(45162120-45162282)
chr4 (8-175)||(45167012-45167174)
chr4 (41-175)||(42468548-42468682)
chr4 (41-175)||(42470877-42471011)
chr4 (42-178)||(19429187-19429323)
chr4 (41-175)||(50855870-50856004)
chr4 (42-172)||(8739337-8739467)
chr4 (419-486)||(13774388-13774455)
chr4 (8-116)||(13774151-13774254)
chr4 (419-486)||(42470542-42470609)
chr4 (419-486)||(45162416-45162483)
chr4 (362-412)||(45166759-45166809)
chr4 (53-116)||(13776449-13776512)
chr4 (420-486)||(42470650-42470716)
chr4 (114-175)||(43179580-43179641)
[»] chr8 (11 HSPs)
chr8 (191-412)||(4878865-4879088)
chr8 (42-178)||(21268240-21268376)
chr8 (41-175)||(4876933-4877067)
chr8 (41-175)||(4879261-4879395)
chr8 (8-175)||(24519235-24519397)
chr8 (49-175)||(36379584-36379710)
chr8 (48-175)||(36377298-36377425)
chr8 (419-486)||(4877335-4877402)
chr8 (419-486)||(36379347-36379414)
chr8 (272-364)||(36377740-36377835)
chr8 (420-486)||(4877228-4877294)
[»] chr1 (14 HSPs)
chr1 (41-175)||(734687-734821)
chr1 (41-175)||(29833184-29833318)
chr1 (41-175)||(2403936-2404070)
chr1 (41-136)||(29833852-29833947)
chr1 (41-119)||(2410058-2410136)
chr1 (419-486)||(10909342-10909409)
chr1 (419-486)||(2409838-2409905)
chr1 (288-369)||(29833618-29833699)
chr1 (42-116)||(10909108-10909182)
chr1 (362-412)||(2404273-2404323)
chr1 (42-116)||(10911352-10911426)
chr1 (409-484)||(734463-734538)
chr1 (41-172)||(8933649-8933789)
chr1 (42-116)||(13011698-13011772)
[»] chr5 (12 HSPs)
chr5 (239-409)||(1779908-1780084)
chr5 (41-175)||(22600853-22600987)
chr5 (41-175)||(23164349-23164483)
chr5 (41-175)||(37207813-37207947)
chr5 (41-173)||(11850016-11850148)
chr5 (41-175)||(11852274-11852408)
chr5 (41-175)||(37215404-37215538)
chr5 (419-486)||(11852057-11852124)
chr5 (419-486)||(37208121-37208188)
chr5 (41-172)||(1779317-1779457)
chr5 (306-364)||(11850465-11850523)
chr5 (126-172)||(1779645-1779691)
[»] scaffold0599 (1 HSPs)
scaffold0599 (8-153)||(1579-1719)
[»] chr2 (12 HSPs)
chr2 (8-175)||(31486824-31486986)
chr2 (8-174)||(31489109-31489270)
chr2 (42-172)||(29801924-29802054)
chr2 (42-175)||(34576700-34576843)
chr2 (42-174)||(23859936-23860077)
chr2 (419-486)||(31487120-31487187)
chr2 (419-486)||(42277664-42277731)
chr2 (272-364)||(31488698-31488793)
chr2 (42-116)||(42275665-42275739)
chr2 (42-116)||(42277891-42277965)
chr2 (308-350)||(29235824-29235866)
chr2 (376-412)||(34577029-34577065)
[»] scaffold0050 (4 HSPs)
scaffold0050 (45-172)||(29284-29410)
scaffold0050 (44-172)||(31597-31726)
scaffold0050 (419-486)||(29565-29632)
scaffold0050 (191-369)||(31100-31281)
[»] chr3 (8 HSPs)
chr3 (42-172)||(18966221-18966351)
chr3 (419-486)||(4531072-4531139)
chr3 (8-116)||(4530835-4530938)
chr3 (8-110)||(4533138-4533235)
chr3 (419-486)||(18966033-18966100)
chr3 (116-175)||(1701120-1701179)
chr3 (362-412)||(8535305-8535355)
chr3 (117-173)||(8535522-8535578)
[»] scaffold1361 (1 HSPs)
scaffold1361 (419-486)||(191-258)
[»] scaffold0008 (1 HSPs)
scaffold0008 (419-486)||(88583-88650)
[»] chr6 (2 HSPs)
chr6 (419-486)||(20642412-20642479)
chr6 (50-116)||(21199308-21199374)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 191 - 412
Target Start/End: Complemental strand, 42679217 - 42678994
Alignment:
Q  191 aatcaaattgacacatctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggataca 290  Q
    |||||| ||||||| | |||||||||||||||||| |||| ||||||| |||| |||||||||| || || ||||||| |||||||||||||||||||||    
T  42679217 aatcaagttgacacgtttaccactcaatgaattcattgaaggaaaagaggaattcaagtcactataacttctagtcacaaaggaaccattgaaggataca 42679118  T
Q  291 a---agttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattactatggagtctatgctaccttcaac 387  Q
    |   |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||     
T  42679117 acaaagttatatatgttccgtccaattcctaagccaccttgggaagttgttagtatggattttt-ccttggattactatggagtctctgctactttcaat 42679019  T
Q  388 gttgctgatctttcaccatactttg 412  Q
    |||||||||||||||||||||||||    
T  42679018 gttgctgatctttcaccatactttg 42678994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 191 - 412
Target Start/End: Original strand, 3934469 - 3934692
Alignment:
Q  191 aatcaaattgacacatctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggataca 290  Q
    |||||| ||| ||| ||||||||| |||||||||| |||| ||||||| |||| ||||| ||||||| || ||||||| ||||||||||||||||| |||    
T  3934469 aatcaagttggcacgtctaccacttaatgaattcattgaaggaaaagaggaattcaagttactagaacttctagtcacaaaggaaccattgaaggaaaca 3934568  T
Q  291 a---agttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattactatggagtctatgctaccttcaac 387  Q
    |   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||     
T  3934569 acaaagttatatatgtcccgtccaattcctaagccaccttgggaagttgttagtatggattttt-ccttggattactatggtgtctctgctactttcaat 3934667  T
Q  388 gttgctgatctttcaccatactttg 412  Q
    |||||||||||||||||||||||||    
T  3934668 gttgctgatctttcaccatactttg 3934692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 8414572 - 8414736
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||||||||||||||||||||||||||||     ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||    
T  8414572 tcaatgcttgaatatgcttgagtatgccaaa-----acactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaaaat 8414666  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagtcaa 178  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  8414667 ctagaaacaaagaaaagtctagagatatggatattttagtatataaaactagaa-gatctagaaaagtcaa 8414736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 3052307 - 3052145
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    ||||||||||| ||| |||||||||     || |||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| || ||    
T  3052307 tcaatgcttgagtatacttgagtat-----atcaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatat 3052213  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3052212 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 3052145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 41 - 178
Target Start/End: Original strand, 36464332 - 36464469
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||    
T  36464332 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctggagatatggata 36464431  T
Q  141 ttctagtacataaaactagaaggatctagaaaagtcaa 178  Q
     |||||||||||||||||||||||||||||||||||||    
T  36464432 ctctagtacataaaactagaaggatctagaaaagtcaa 36464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 19786838 - 19786704
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  19786838 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 19786739  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  19786738 ctctagtacataagcctagaaggatctagaaaagt 19786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 8733578 - 8733740
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||||||||  || |||||||||||||||     ||||||||||||||||||||| |||| |||| |||||||||||||| ||||||||||| || ||    
T  8733578 tcaatgcttgatgattcttgagtatgccaaa-----acactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatat 8733672  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  8733673 ctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 8733740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 19789144 - 19789010
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  19789144 aaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 19789045  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  19789044 ctctagtacataagcctagaaggatctagaaaagt 19789010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 3932817 - 3932656
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    ||||||||||| ||||||||||||| |      |||||||||| ||||||||||||| |||| || | |||||||||||||||||||||||||| || ||    
T  3932817 tcaatgcttgattatgcttgagtatcc------aaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatat 3932724  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  3932723 ctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 3932656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 3935056 - 3934895
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    ||||||||||| ||||||||||||| |      |||||||||| ||||||||||||| |||| || | |||||||||||||||||||||||||| || ||    
T  3935056 tcaatgcttgattatgcttgagtatcc------aaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatat 3934963  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  3934962 ctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagt 3934895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 16497370 - 16497284
Alignment:
Q  325 cttgggaagttgttagtatggatttttcccttggattactatggagtctatgctaccttcaacgttgctgatctttcaccatactttg 412  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |  ||| ||||| |||||||||||||||||||||||||    
T  16497370 cttgggaagttgttagtatggatttttcc-ttggattactatggagtctcttatactttcaatgttgctgatctttcaccatactttg 16497284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 8733444 - 8733377
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  8733444 aaaatcaacggaaagtgagttttcaagtgagcaaggagttgcctttgtgaaacttcactttgcggcca 8733377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 206 - 332
Target Start/End: Original strand, 19788635 - 19788764
Alignment:
Q  206 tctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggat---acaaagttatgtatg 302  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||  |  ||| ||||||||||| ||||||   |||||||||||| ||    
T  19788635 tctaccactcaatcaattcaatgaaggaaaagatggatgcaagtcactagaactttcacacacaaaggaaccattcaaggataagacaaagttatgtctg 19788734  T
Q  303 tcccgtccaattcctaagccaccttgggaa 332  Q
       |||||| ||||||||||||||||||||    
T  19788735 cttcgtccagttcctaagccaccttgggaa 19788764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 16533591 - 16533505
Alignment:
Q  206 tctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggatacaaa 292  Q
    |||||||||| ||||||||| |||| ||||||| |||| ||||||||||||| || ||||||| |||||||||||||||||||||||    
T  16533591 tctaccactcgatgaattcattgaaggaaaagaggaattcaagtcactagaacttctagtcacaaaggaaccattgaaggatacaaa 16533505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 16632071 - 16632157
Alignment:
Q  206 tctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggatacaaa 292  Q
    |||||||||| ||||||||| |||| ||||||| |||| ||||||||||||| || ||||||| |||||||||||||||||||||||    
T  16632071 tctaccactcgatgaattcattgaaggaaaagaggaattcaagtcactagaacttctagtcacaaaggaaccattgaaggatacaaa 16632157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 19787017 - 19787084
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  19787017 aaaatcaacggaaagtgagttttcaagtgagtaaggagttgcctttgtgaaacttcactttgcggcca 19787084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 8414994 - 8414936
Alignment:
Q  354 cttggattactatggagtctatgctaccttcaacgttgctgatctttcaccatactttg 412  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  8414994 cttggattactatggagtctatgctaccttcaatgttgctgatatttcaccatactttg 8414936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 419 - 480
Target Start/End: Complemental strand, 42680733 - 42680672
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttg 480  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||    
T  42680733 aaaatcaacggaaagtgagttttcaagtgagcaaggagttgcctttgtaaaacttcactttg 42680672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 28610350 - 28610424
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    ||||||| ||||||||||||||| |||| |||| ||| |||||||| ||||||||||||| || |||||||||||    
T  28610350 aaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaatatctagaaaca 28610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 486
Target Start/End: Complemental strand, 16535094 - 16535017
Alignment:
Q  409 tttgcgcgggaaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    |||||||||||||||||||| |||||| ||||||||||||||| | |||||| ||  | || ||||||||||||||||    
T  16535094 tttgcgcgggaaaatcaacgaaaagtgagttttcaagtgagcaaggagttgctttcttaaatcttcactttgcggcca 16535017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 486
Target Start/End: Original strand, 16630568 - 16630645
Alignment:
Q  409 tttgcgcgggaaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    |||||||||||||||||||| |||||| ||||||||||||||| | |||||| ||  | || ||||||||||||||||    
T  16630568 tttgcgcgggaaaatcaacgaaaagtgagttttcaagtgagcaaggagttgctttcttaaatcttcactttgcggcca 16630645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 8731285 - 8731359
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||  |||||||||||||| |||| |||| |||||||||||| ||||||||| ||| || |||||||||||    
T  8731285 aaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatctagaaaca 8731359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 3932941 - 3933016
Alignment:
Q  409 tttgcgcgggaaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggc 484  Q
    |||||||||||||||||||| |||||| ||||||||||||||| | |||||| ||  | || ||||||||||||||    
T  3932941 tttgcgcgggaaaatcaacgaaaagtgagttttcaagtgagcaaggagttgctttcttaaatcttcactttgcggc 3933016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 42678670 - 42678745
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||| ||||||||||||||| |||| ||| || |||||| ||| ||||||||||||| |  |||||||||||    
T  42678670 aaaacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatctagaaaca 42678745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 191 - 412
Target Start/End: Complemental strand, 42469078 - 42468855
Alignment:
Q  191 aatcaaattgacacatctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggataca 290  Q
    |||||| ||| ||| ||||||||| |||||||||| |||| ||||||| |||| ||||| ||||||| || ||||||| ||||||||||||||||| |||    
T  42469078 aatcaagttggcacgtctaccacttaatgaattcattgaaggaaaagaggaattcaagttactagaacttctagtcacaaaggaaccattgaaggaaaca 42468979  T
Q  291 a---agttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattactatggagtctatgctaccttcaac 387  Q
    |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||     
T  42468978 acaaagttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggattttt-ccttggattactatggtgtctctgctactttcaat 42468880  T
Q  388 gttgctgatctttcaccatactttg 412  Q
    |||||||||||||||||||||||||    
T  42468879 gttgctgatctttcaccatactttg 42468855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 45162282 - 45162120
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||| ||||  ||||||||||||||||||     ||||||||||||||||||||| |||| || | ||||||| |||||||||||||||||| || ||    
T  45162282 tcaatgtttgatgatgcttgagtatgccaaa-----acactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatat 45162188  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  45162187 ctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagt 45162120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 45167174 - 45167012
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||| ||||  ||||||||||||||||||     ||||||||||||||||||||| |||| || | ||||||| |||||||||||||||||| || ||    
T  45167174 tcaatgtttgatgatgcttgagtatgccaaa-----acactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatat 45167080  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  45167079 ctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagt 45167012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 42468548 - 42468682
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  42468548 aaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 42468647  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  42468648 ctctagtacataagcctagaaggatctagaaaagt 42468682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 42470877 - 42471011
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  42470877 aaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 42470976  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  42470977 ctctagtacataagcctagaaggatctagaaaagt 42471011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 19429187 - 19429323
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatat 141  Q
    ||||||| ||||||||||||||| |||| |||| |||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||     
T  19429187 aaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatctataaacaaagaaaagtctagagatatgaatac 19429286  T
Q  142 tctagtacataaaactagaaggatctagaaaagtcaa 178  Q
    |||||||||||||||||||||||||||||||||||||    
T  19429287 tctagtacataaaactagaaggatctagaaaagtcaa 19429323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 50855870 - 50856004
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  50855870 aaaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggata 50855969  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||| ||||||||  ||||||||||||||||||||    
T  50855970 ctctggtacataagcctagaaggatctagaaaagt 50856004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 8739467 - 8739337
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatat 141  Q
    ||||||| |||||| |||||| | ||||  ||| |||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||      
T  8739467 aaacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatggatgc 8739368  T
Q  142 tctagtacataaaactagaaggatctagaaa 172  Q
    |||||| ||||  ||||||||||||||||||    
T  8739367 tctagttcatatgactagaaggatctagaaa 8739337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 13774388 - 13774455
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  13774388 aaaatcaacggaaagtgagttttcaagtgagcaaggagttgcctttgtgaaacttcactttgcggcca 13774455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 13774254 - 13774151
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||||||||  |||||| |||||||||||     ||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||| || ||    
T  13774254 tcaatgcttgatgatgcttcagtatgccaaa-----acactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatat 13774160  T
Q  108 ctagaaaca 116  Q
    |||||||||    
T  13774159 ctagaaaca 13774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 42470609 - 42470542
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||  ||||| | ||||||||||||||||||||||||||||||||    
T  42470609 aaaatcaacggaaagtgagttttcaaaagagcaaggagttgcctttgtgaaacttcactttgcggcca 42470542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 45162416 - 45162483
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    |||||||||| |||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  45162416 aaaatcaacgtaaagtgagttttcaagtgagcaaggagttgcctttgtaaaacttcactttgcggcca 45162483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 45166759 - 45166809
Alignment:
Q  362 actatggagtctatgctaccttcaacgttgctgatctttcaccatactttg 412  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  45166759 actatggagtctctgctaccttcaatgttgctgatctttcaccatactttg 45166809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 13776512 - 13776449
Alignment:
Q  53 ggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||||||| |||| |||| |||||||||||| ||||||||||||| || |||||||||||    
T  13776512 ggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatctagaaaca 13776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 42470716 - 42470650
Alignment:
Q  420 aaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    |||||||||||||||| ||||||||||||||| |  ||||| ||  | |||||||||||||||||||    
T  42470716 aaatcaacggaaagtgagttttcaagtgagcaaggtgttgctttcttaaaacttcactttgcggcca 42470650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 43179641 - 43179580
Alignment:
Q  114 acaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    |||||||||||| |||||| ||||||| |||||| ||||  |||||||||||| | ||||||    
T  43179641 acaaagaaaagtatagagacatggatactctagttcatatgactagaaggatccaaaaaagt 43179580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 191 - 412
Target Start/End: Original strand, 4878865 - 4879088
Alignment:
Q  191 aatcaaattgacacatctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggataca 290  Q
    |||||| ||| ||| ||||||||| |||||||||| |||| ||||||| |||| ||||| ||||||| || ||||||| ||||||||||||||||| |||    
T  4878865 aatcaagttggcacgtctaccacttaatgaattcattgaaggaaaagaggaattcaagttactagaacttctagtcacaaaggaaccattgaaggaaaca 4878964  T
Q  291 a---agttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattactatggagtctatgctaccttcaac 387  Q
    |   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||     
T  4878965 acaaagttatatatgtcccgtccaattcctaagccaccttgggaagttgttagtatggattttt-ccttggattactatggtgtctctgctactttcaat 4879063  T
Q  388 gttgctgatctttcaccatactttg 412  Q
    |||||||||||||||||||||||||    
T  4879064 gttgctgatctttcaccatactttg 4879088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 21268240 - 21268376
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatat 141  Q
    ||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||     
T  21268240 aaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatac 21268339  T
Q  142 tctagtacataaaactagaaggatctagaaaagtcaa 178  Q
    | |||||||||||||||||||||||||||||||||||    
T  21268340 tttagtacataaaactagaaggatctagaaaagtcaa 21268376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 4877067 - 4876933
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  4877067 aaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 4876968  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     | ||||||||||  ||||||||||||||||||||    
T  4876967 ctatagtacataagcctagaaggatctagaaaagt 4876933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 4879395 - 4879261
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  4879395 aaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 4879296  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     | ||||||||||  ||||||||||||||||||||    
T  4879295 ctatagtacataagcctagaaggatctagaaaagt 4879261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 24519235 - 24519397
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    ||||||||||| ||||||| |||||||||||     ||||||| ||||||||||||| |||| |||| |||||||||||||||||| ||||||| || ||    
T  24519235 tcaatgcttgattatgcttcagtatgccaaa-----acactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatat 24519329  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||  ||||||||||||||||||||    
T  24519330 ctagaaacaaagaaaagtctagagatatggatacttttgtacataagcctagaaggatctagaaaagt 24519397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 36379584 - 36379710
Alignment:
Q  49 aggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatattctagta 148  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||| |||||||    
T  36379584 aggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccagagatatggatactctagta 36379683  T
Q  149 cataaaactagaaggatctagaaaagt 175  Q
    |||||  ||||||||||||||||||||    
T  36379684 cataagcctagaaggatctagaaaagt 36379710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 36377298 - 36377425
Alignment:
Q  48 taggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatattctagt 147  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||||||| ||| || ||||  ||||||||||||||  ||||||||||||| ||||||    
T  36377298 taggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatctgaaaacaaagaaaagttcagagatatggatactctagt 36377397  T
Q  148 acataaaactagaaggatctagaaaagt 175  Q
    ||||||  ||||||||||||||||||||    
T  36377398 acataagcctagaaggatctagaaaagt 36377425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 4877335 - 4877402
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||  ||||| | ||||||||||||||||||||||||||||||||    
T  4877335 aaaatcaacggaaagtgagttttcaaaagagcaaggagttgcctttgtgaaacttcactttgcggcca 4877402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 36379414 - 36379347
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||||| |||||||||||||||||||    
T  36379414 aaaatcaacggaaagtgagttttcaagagagcaaggagttgcctttgttaaacttcactttgcggcca 36379347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 364
Target Start/End: Complemental strand, 36377835 - 36377740
Alignment:
Q  272 ggaaccattgaaggata---caaagttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattact 364  Q
    ||||||||| |||||||   ||||||||||| ||   |||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  36377835 ggaaccattcaaggataaaacaaagttatgtctgcttcgtccagttcctaagccaccttgggaagatgttactattgatttttcccttggattact 36377740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 486
Target Start/End: Original strand, 4877228 - 4877294
Alignment:
Q  420 aaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    |||||||||||||||| ||||||||||||||| |  ||||| ||  | |||||||||||||||||||    
T  4877228 aaatcaacggaaagtgagttttcaagtgagcaaggtgttgctttcttaaaacttcactttgcggcca 4877294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 734687 - 734821
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| || | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  734687 aaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 734786  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||| ||||||||||||||||||||    
T  734787 ctctagtacataaacctagaaggatctagaaaagt 734821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 29833184 - 29833318
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  29833184 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagacatggata 29833283  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  29833284 ctctagtacataagcctagaaggatctagaaaagt 29833318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 2403936 - 2404070
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    ||||||||| ||||||| |||||| |||| |||| ||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  2403936 aaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggata 2404035  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  2404036 ctctagtacataagcctagaaggatctagaaaagt 2404070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 29833947 - 29833852
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatg 136  Q
    |||||||||||| ||||||||||| |||| |||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||    
T  29833947 aaaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 2410058 - 2410136
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaag 119  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||| || ||||||||||||||    
T  2410058 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatctagaaacaaag 2410136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 10909342 - 10909409
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  10909342 aaaatcaacggaaagtgagttttcaagtgagcaaggagttgcctttgtaaaacttcactttgcggcca 10909409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 2409905 - 2409838
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    |||||||||| |||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  2409905 aaaatcaacgtaaagtgagttttcaagtgagcaaggagttgcctttgtaaaacttcactttgcggcca 2409838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 369
Target Start/End: Complemental strand, 29833699 - 29833618
Alignment:
Q  288 acaaagttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattactatgga 369  Q
    |||||||||| |||| | |||||||||||||||||||||||| ||| ||||| ||| |||||||||||| ||||||| ||||    
T  29833699 acaaagttatatatgcctcgtccaattcctaagccaccttggaaagatgttactattgatttttcccttagattactttgga 29833618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 10909182 - 10909108
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||  |||||||||||||| |||| |||| |||||||||||| ||||||||||||| || |||||||||||    
T  10909182 aaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 10909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 2404323 - 2404273
Alignment:
Q  362 actatggagtctatgctaccttcaacgttgctgatctttcaccatactttg 412  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  2404323 actatggagtctctgctaccttcaatgttgctgatctttcaccatactttg 2404273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 10911426 - 10911352
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||  |||||||||||||| |||| |||| |||||||| ||| ||||||||||||| || |||||||||||    
T  10911426 aaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatctagaaaca 10911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 734538 - 734463
Alignment:
Q  409 tttgcgcgggaaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggc 484  Q
    |||||||||||||||||||| |||||| ||||||||||||||| | |||||| ||  | || ||||||||||||||    
T  734538 tttgcgcgggaaaatcaacgaaaagtgagttttcaagtgagcaaggagttgctttcttaaatcttcactttgcggc 734463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 8933649 - 8933789
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaa---------acaaagaaaagtctagag 131  Q
    ||||||||  |||||||||||||| |||| |||| |||||||| ||| ||||||||||||| |  ||||||||         ||||||||| | |||||     
T  8933649 aaaacacttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaa 8933748  T
Q  132 atatggatattctagtacataaaactagaaggatctagaaa 172  Q
    | ||||||| |||||| ||||  ||||||||||||||||||    
T  8933749 acatggatactctagttcatatgactagaaggatctagaaa 8933789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 13011772 - 13011698
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||  |||||||||||||| |||| |||| |||||||||||| ||||| ||||||  || |||||||||||    
T  13011772 aaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatctagaaaca 13011698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 239 - 409
Target Start/End: Complemental strand, 1780084 - 1779908
Alignment:
Q  239 tgaatgcaagtcactagaaattatagtcacgaaggaaccattgaaggatacaa---agttatgtatgtcccgtccaattcctaagccaccttgggaagtt 335  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||| ||||    
T  1780084 tgaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattcctaagccaccttgggtagtt 1779985  T
Q  336 gttagtatggatttttcccttggattactatggagtctatgc----taccttcaacgttgctgatctttcaccatact 409  Q
    ||||||||||||||||||| |||||||||||||||||| |||    |||||| || ||||||||| |||| |||||||    
T  1779984 gttagtatggatttttccc-tggattactatggagtctctgctatgtacctttaatgttgctgatttttccccatact 1779908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 22600987 - 22600853
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||||||| ||| ||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  22600987 aaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggata 22600888  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  22600887 ctctagtacataagcctagaaggatctagaaaagt 22600853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 23164349 - 23164483
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||| ||||||| |||| |||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  23164349 aaaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggata 23164448  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  23164449 ctctagtacataagcctagaaggatctagaaaagt 23164483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 37207947 - 37207813
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||    
T  37207947 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggata 37207848  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||||||||||||||    
T  37207847 ctctagtacataagcctagaaggatctagaaaagt 37207813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 11850016 - 11850148
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  11850016 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggata 11850115  T
Q  141 ttctagtacataaaactagaaggatctagaaaa 173  Q
     ||| ||||||||  ||||||||||||||||||    
T  11850116 ctcttgtacataagcctagaaggatctagaaaa 11850148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 11852274 - 11852408
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||||||    
T  11852274 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaataaaagtctagagatatggata 11852373  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||||||||  ||||||||  ||||||||||    
T  11852374 ctctagtacataagcctagaaggtcctagaaaagt 11852408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 41 - 175
Target Start/End: Complemental strand, 37215538 - 37215404
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggata 140  Q
    ||||||||| |||||||||||||| |||| |||| |||||||||||| |||||| |||||| || |||||||||||||||||||| |||||| |||||||    
T  37215538 aaaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatggata 37215439  T
Q  141 ttctagtacataaaactagaaggatctagaaaagt 175  Q
     ||||||| ||||  ||||||||||||||||||||    
T  37215438 ctctagtatataagcctagaaggatctagaaaagt 37215404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 11852124 - 11852057
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||| ||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  11852124 aaaataaacggaaagtgagtttacaagtgagcaaggagttgcctttgtgaaacttcactttgcggcca 11852057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 37208121 - 37208188
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||| ||| | |||||||||||| |||||||||||||||||||    
T  37208121 aaaatcaacggaaagtgagttttcaagtgcgcaaggagttgcctttgtaaaacttcactttgcggcca 37208188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 1779317 - 1779457
Alignment:
Q  41 aaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaa---------acaaagaaaagtctagag 131  Q
    |||||||| | ||||||||||||| ||||  ||| |||||||||||| ||||||||||||| |  ||||||||         ||||||||| | |||||     
T  1779317 aaaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctagaa 1779416  T
Q  132 atatggatattctagtacataaaactagaaggatctagaaa 172  Q
    | ||||||| |||||| ||||  ||||||||||||||||||    
T  1779417 acatggatactctagttcatatgactagaaggatctagaaa 1779457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 11850523 - 11850465
Alignment:
Q  306 cgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattact 364  Q
    |||||| |||||||||||||||||||||  |||| ||| ||||||||||||||||||||    
T  11850523 cgtccagttcctaagccaccttgggaagacgttaatattgatttttcccttggattact 11850465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 1779645 - 1779691
Alignment:
Q  126 ctagagatatggatattctagtacataaaactagaaggatctagaaa 172  Q
    ||||||||| |||||||||||| ||||  ||||||||||||||||||    
T  1779645 ctagagatagggatattctagttcatatgactagaaggatctagaaa 1779691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 1719 - 1579
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||||||||  ||||||||||||||||||     ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| || ||    
T  1719 tcaatgcttgatgatgcttgagtatgccaaa-----acactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatat 1625  T
Q  108 ctagaaacaaagaaaagtctagagatatggatattctagtacataa 153  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  1624 ctagaaacaaagaaaagtctagagatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 31486986 - 31486824
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacact-aggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaa 106  Q
    ||||||||||| ||| |||||||||||||||     ||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||| || |    
T  31486986 tcaatgcttgattat-cttgagtatgccaaa-----acacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaata 31486893  T
Q  107 tctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||| |||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  31486892 tctggaaacaaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagt 31486824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 31489270 - 31489109
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacact-aggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaa 106  Q
    ||||||||||| ||| |||||||||||||||     ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |    
T  31489270 tcaatgcttgattat-cttgagtatgccaaa-----acacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaata 31489177  T
Q  107 tctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaag 174  Q
    ||| |||||||||||||||| ||||||||||||| ||||||||||||   ||||||||||||||||||    
T  31489176 tctggaaacaaagaaaagtccagagatatggatactctagtacataagcttagaaggatctagaaaag 31489109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 29802054 - 29801924
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatat 141  Q
    ||||||| ||||||||||||||| |||| |||| ||||||| ||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||      
T  29802054 aaacacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctacaaacaaagaaaagtctagagatatggatgc 29801955  T
Q  142 tctagtacataaaactagaaggatctagaaa 172  Q
    | |||| ||||  ||||||||||| ||||||    
T  29801954 tatagttcatatgactagaaggatttagaaa 29801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 34576700 - 34576843
Alignment:
Q  42 aaacactaggtggtgagccttatctatattact-ttaggaaggctctccattacaaactagraaaatctagaa---------acaaagaaaagtctagag 131  Q
    ||||||| | ||||||||||||| |||| || | ||||||||||||| ||||||||||||| || ||||||||         ||||||||||||||||||    
T  34576700 aaacacttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagtctagag 34576799  T
Q  132 atatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    | ||| ||| |||||| ||||  |||||||||||||||||||||    
T  34576800 acatgaatactctagttcatatgactagaaggatctagaaaagt 34576843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 174
Target Start/End: Complemental strand, 23860077 - 23859936
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaa---------acaaagaaaagtctagaga 132  Q
    ||||||| ||||||||||||||| |||| |||| |||||||||||| ||||||||||||| |  ||||||||         ||||||||| | ||||| |    
T  23860077 aaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaatattgattacaaagaaaggcctagaaa 23859978  T
Q  133 tatggatattctagtacataaaactagaaggatctagaaaag 174  Q
     ||| ||| |||||| ||||| ||||||||||||||||||||    
T  23859977 catgcatactctagttcataagactagaaggatctagaaaag 23859936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 31487120 - 31487187
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||| ||||| | |||||||||||| |||||||||||||||||||    
T  31487120 aaaatcaacggaaagtgagttttcaagagagcaaggagttgcctttgttaaacttcactttgcggcca 31487187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 42277731 - 42277664
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||| || |||||||||||||||||||    
T  42277731 aaaatcaacggaaagtgagttttcaagtgagcaaggagttgccttagtaaaacttcactttgcggcca 42277664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 364
Target Start/End: Original strand, 31488698 - 31488793
Alignment:
Q  272 ggaaccattgaaggata---caaagttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattact 364  Q
    ||||||||| |||||||   ||||||||||| ||   |||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  31488698 ggaaccattcaaggataaaacaaagttatgtctgcttcgtccagttcctaagccaccttgggaagatgttactattgatttttcccttggattact 31488793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 42275665 - 42275739
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||  |||||||||||||| |||| |||| |||||||||||| ||||||||||||| || |||||||||||    
T  42275665 aaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 42275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 42277891 - 42277965
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||  |||||||||||||| |||| |||| ||||||| |||| ||||||||||||| || |||||||||||    
T  42277891 aaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatctagaaaca 42277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 29235824 - 29235866
Alignment:
Q  308 tccaattcctaagccaccttgggaagttgttagtatggatttt 350  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  29235824 tccaattcctaaggcaccttgggaagatgttagtatggatttt 29235866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 34577065 - 34577029
Alignment:
Q  376 gctaccttcaacgttgctgatctttcaccatactttg 412  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  34577065 gctaccttcaatgttactgatctttcaccatactttg 34577029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 29410 - 29284
Alignment:
Q  45 cactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatattct 144  Q
    |||| ||||||||||||||| |||| |||| ||||||| |||||||||||||||||  || |||||||||||| ||||||||||||||||||||| ||||    
T  29410 cacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaacaa-gaaaagtctagagatatggatgttct 29312  T
Q  145 agtacataaaactagaaggatctagaaa 172  Q
    ||||||||  ||||||||||||||||||    
T  29311 agtacatatgactagaaggatctagaaa 29284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 31726 - 31597
Alignment:
Q  44 acactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagag--atatggatat 141  Q
    ||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||| || ||||| |||| |||||||||||||||  |||||||| |    
T  31726 acacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaac-aagaaaagtctagagatatatggatgt 31628  T
Q  142 tctagtacataaaactagaaggatctagaaa 172  Q
    |||||||||||  ||||||||||||||||||    
T  31627 tctagtacatatgactagaaggatctagaaa 31597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 29565 - 29632
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||| ||||||    
T  29565 aaaatcaacggaaagtgggttttcaagtgagcaaggacttgcctttgtaaaacttcactttacggcca 29632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 369
Target Start/End: Original strand, 31100 - 31281
Alignment:
Q  191 aatcaaattgacacatctaccactcaatgaattcaatgaaagaaaagatgaatgcaagtcactagaaattatagtcacgaaggaaccatt---gaaggat 287  Q
    |||||| ||| ||| ||||||||||||||||||||||||  ||||| | |||| ||||  ||| | | ||  | || | |||||||||||   |||| |     
T  31100 aatcaacttggcacctctaccactcaatgaattcaatgatggaaaaaaggaattcaagcaacttggactttcactcgcaaaggaaccattcaagaagaaa 31199  T
Q  288 acaaagttatgtatgtcccgtccaattcctaagccaccttgggaagttgttagtatggatttttcccttggattactatgga 369  Q
    ||||||||||  || || |||| |  |||||||||||||||||||| ||||| |||  ||||||||||||||||||| ||||    
T  31200 acaaagttatacatatctcgtctagatcctaagccaccttgggaagatgttactattaatttttcccttggattactttgga 31281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 18966221 - 18966351
Alignment:
Q  42 aaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaacaaagaaaagtctagagatatggatat 141  Q
    ||||||| ||||||||||||||| |||| |||| ||||||| | |||||| ||| ||||| || |||||||||| |||||||||| |||||||||||||     
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaaccaagaaaagtcaagagatatggatac 18966320  T
Q  142 tctagtacataaaactagaaggatctagaaa 172  Q
    |||||||| ||  ||||||||||||||||||    
T  18966321 tctagtacgtatgactagaaggatctagaaa 18966351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 4531072 - 4531139
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  4531072 aaaatcaacggaaagtgagttttcaagtgagcaaggagttgcctttgtgaaacttcactttgcggcca 4531139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 4530938 - 4530835
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||||||||  |||||| |||||||||||     ||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||| || ||    
T  4530938 tcaatgcttgatgatgcttcagtatgccaaa-----acactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatat 4530844  T
Q  108 ctagaaaca 116  Q
    |||||||||    
T  4530843 ctagaaaca 4530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 4533235 - 4533138
Alignment:
Q  8 tcaatgcttgaatatgcttgagtatgccaaattaaaacactaggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaat 107  Q
    |||||||||||  |||||| |||||||||||     ||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||| || ||    
T  4533235 tcaatgcttgatgatgcttcagtatgccaaa-----acactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatat 4533141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 18966100 - 18966033
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| ||  |||||||||||||||||||    
T  18966100 aaaatcaacggaaagtgagttttcaagtgagcatggagttgcctatggaaaacttcactttgcggcca 18966033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 1701179 - 1701120
Alignment:
Q  116 aaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagt 175  Q
    ||||||||| ||||| ||||||||| |||| | ||||  |||||||||||||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagt 1701120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 8535305 - 8535355
Alignment:
Q  362 actatggagtctatgctaccttcaacgttgctgatctttcaccatactttg 412  Q
    |||||||||||| ||||||||| || |||| ||||||||||||||| ||||    
T  8535305 actatggagtctctgctacctttaatgttgttgatctttcaccatattttg 8535355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  117 aagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaa 173  Q
    |||||||||||||||||||||||| | ||||  |||  |||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 191 - 258
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    |||||||||| |||||| ||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  191 aaaatcaacgaaaagtgagttttcaagtgagcaaggagttgcctttgtaaaacttcactttgcggcca 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 88583 - 88650
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||| | |||| ||||||| |||||||||||||||||||    
T  88583 aaaatcaacggaaagtgagttttcaagtgagcaaggagtttcctttgtaaaacttcactttgcggcca 88650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 419 - 486
Target Start/End: Original strand, 20642412 - 20642479
Alignment:
Q  419 aaaatcaacggaaagtgggttttcaagtgagcatgaagttgcctttgtgaaacttcactttgcggcca 486  Q
    ||||||||||||||||| ||||||||||||||| | |||||| | ||  |||||||||||||| ||||    
T  20642412 aaaatcaacggaaagtgagttttcaagtgagcaaggagttgcatgtggaaaacttcactttgcagcca 20642479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 21199374 - 21199308
Alignment:
Q  50 ggtggtgagccttatctatattactttaggaaggctctccattacaaactagraaaatctagaaaca 116  Q
    |||||||| |||||| |||| ||||  ||||||||| | ||||||||||||| || |||||||||||    
T  21199374 ggtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaaca 21199308  T

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