View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-6 (Length: 852)
Name: NF1375-Insertion-6
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-6 |
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| [»] chr4 (6 HSPs) |
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| [»] scaffold0445 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 261 - 852
Target Start/End: Original strand, 4456729 - 4457301
Alignment:
| Q |
261 |
atgttagtaattaacttattaagagaaaattaaatattagtactggatatcaaactccaaacatcattttcttaatatttttt-cattgtcttaaccctt |
359 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||| || ||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
4456729 |
atgttagtaattaacttattaggagaaaattaaatattagcactagatataaaattctaaacatcgttttcttaatatttttttcattgtcttaaccctt |
4456828 |
T |
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| Q |
360 |
accattatattacaacttctgttgattctttggtactttgacaaggaccggctccctcaagaccatatggtggggtattttcagtattatgctttcatta |
459 |
Q |
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| T |
4456829 |
accattatattacaacttctgttgattcttt--------gacaaggaccggctctctcaagaccatatggtggggtattttcagtattatgttttcatta |
4456920 |
T |
|
| Q |
460 |
tctttattaataggcacatgttgattgatgatatacaaatgcaagttaccccatttgctttaatgagtaagacaagagaatg-agtggggtatgtccaaa |
558 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4456921 |
tctttattactaggcacatgttgattgatgatatacaaatgcaagttaccccatttgctttaatgagtaagacaagagaatgaagtggggtatgtccaaa |
4457020 |
T |
|
| Q |
559 |
tttatcaaaactcaacattcagcatcaacttgaccggctgttttttacttatagtaacaataatcaatcttttaaatcttctctatataattttatttat |
658 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| |
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| T |
4457021 |
tttatcaaaactcaacattcagcatcaacttgaccggctgttttttacctatagtaacaataattaatcttttaaatc------------ttttatttat |
4457108 |
T |
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| Q |
659 |
tgaagatatgattgtaatatttctttatttggataaactatactataaatagaagagttttcattaaagatcctacaaatcaagttgtttagatgatagg |
758 |
Q |
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| T |
4457109 |
tgaagatatgattgcaatatttctttatttggataaactatactataaatagaagagttttcattaaagatcctacaaatcaagttgtttagatgatagg |
4457208 |
T |
|
| Q |
759 |
aattgtaatataagatatcatcatgaatgaaaataaacggctgggggcgcatattctattgctgttttgcatattcgatctacttgttactata |
852 |
Q |
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| T |
4457209 |
aattgtaatataagatatcatcatgaatgaaaataaacggct-ggggcgcatattctattgctgcattgcatattcgatctacttgttactata |
4457301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 4456472 - 4456666
Alignment:
| Q |
8 |
tatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttatag |
107 |
Q |
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|||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
4456472 |
tatgcatcggtgttattagaaatcttggatgtcttacatcatgagactgtaaatttaattcatattttgaggaagcaaaatatttgtgctgactttataa |
4456571 |
T |
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| Q |
108 |
ctaaggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaaaagacagcctagctagttag |
202 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4456572 |
ctaaggaggctttttattccgcctattcagttaagtggactggtcctctaactaacttaaagtctctccttctaaaagacagcctagctagttag |
4456666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 55150523 - 55150637
Alignment:
| Q |
8 |
tatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttatag |
107 |
Q |
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||||||| ||||||||||||||||| |||| |||||| ||| | ||||||||||||||||||||| | |||| || ||||||||||||||||| | |
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| T |
55150523 |
tatgcatttgtgttactagaaatctcagatgccttacatcatta-----taaatttagttcatattttgagggagcagaacatttgtgctgactttatgg |
55150617 |
T |
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| Q |
108 |
ctaaggaggctttttattcc |
127 |
Q |
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|||||||||||| ||||||| |
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| T |
55150618 |
ctaaggaggcttcttattcc |
55150637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 29827601 - 29827711
Alignment:
| Q |
10 |
tgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgac-tttatagc |
108 |
Q |
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||||||||||||| ||||||||| | ||| ||||| | ||||| ||||||||||||||||||||| | | | ||||| |||||||||||| ||||| | |
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| T |
29827601 |
tgcatctgtgttattagaaatctcgaatgcattacatcgtgagactgtaaatttagttcatattttaagggaacaaaacatttgtgctgacttttatgac |
29827700 |
T |
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| Q |
109 |
taaggaggctt |
119 |
Q |
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| T |
29827701 |
taaggaggctt |
29827711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 13773857 - 13773954
Alignment:
| Q |
8 |
tatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttat |
105 |
Q |
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|||| ||||||||||||| |||||| |||||||| || ||| || ||||||||||||||||||||||| | ||| ||| ||||||||||| ||||| |
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| T |
13773857 |
tatgtatctgtgttactaaaaatctaagatgtcttgcatcattggactgtaaatttagttcatattttgagggagcgaaacatttgtgctgattttat |
13773954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 13776636 - 13776726
Alignment:
| Q |
112 |
ggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaaaagacagcctagctagttag |
202 |
Q |
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| T |
13776636 |
ggaggcttcctattccgcctgctcagttcactggattcgtcctctagctggcttagagtctctcattataagagacaatctagctagttag |
13776726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 2941488 - 2941314
Alignment:
| Q |
8 |
tatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttatag |
107 |
Q |
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||||||| || |||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||| | |||| || ||||||||||| ||||| | |
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| T |
2941488 |
tatgcatttgcgttactagaaatctcggatgccttacatcatgagactgtaaatttagttcatattttgagggagcagaacatttgtgctgattttatgg |
2941389 |
T |
|
| Q |
108 |
ctaaggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaa |
182 |
Q |
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|||| ||||||| |||||| ||| |||| ||| ||||||||||||| | || ||||| ||||||||||||||| |
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| T |
2941388 |
ctaaagaggcttcctattccgcctgctcagctcaatggactcgtcctccagctggcttagagtctctccttctaa |
2941314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 7881951 - 7881887
Alignment:
| Q |
7 |
atatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcata |
71 |
Q |
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| T |
7881951 |
atatgcctctgtgttactagaaatctcggatgccttgcatcatgagactgtaaatttagttcata |
7881887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 29209915 - 29210013
Alignment:
| Q |
16 |
tgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttatagctaaggag |
115 |
Q |
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| T |
29209915 |
tgtgctactagaaatctcggatgccttgcatcatg-gactgtaaattcagttcatattatgagggagcagaacatttgtgctgactttatggctaaggag |
29210013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0445 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0445
Description:
Target: scaffold0445; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 10857 - 10663
Alignment:
| Q |
8 |
tatgcatctgtgttactagaaatcttggatgtcttacaacatgagattgtaaatttagttcatattttgaagaagcaaaatatttgtgctgactttatag |
107 |
Q |
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||||||| ||||||||||||||| | ||||| |||||| ||| || | ||||||||||| ||||||||| | |||| || ||| || || ||| || | |
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| T |
10857 |
tatgcatatgtgttactagaaatatcggatgccttacataatgggactataaatttagttaatattttgagggagcagaacattaatgttgccttcatgg |
10758 |
T |
|
| Q |
108 |
ctaaggaggctttttattccacctattcagttcagtggactcgtcctctaactagcttaaagtctctccttctaaaagacagcctagctagttag |
202 |
Q |
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|||| |||| || ||||| ||| ||| ||| |||||| |||||| || |||| ||||||||||||||| ||||| |||||||||||| |
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| T |
10757 |
ctaaagaggtttcctattctgcctgctcaactcattggacttgtcctcctgctgacttagagtctctccttctaagagacaatctagctagttag |
10663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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