View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-7 (Length: 793)
Name: NF1375-Insertion-7
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 637; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 7 - 713
Target Start/End: Complemental strand, 29054166 - 29053446
Alignment:
| Q |
7 |
aggatattgattttttaccttcaagtcatccaaggtcggttcattgatttcaacttaattttgttgttact--atgaatttataactttaatttgttccc |
104 |
Q |
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| T |
29054166 |
aggatattgattttttaccttcaagttatccaaggtcggttcattgatttcaacttaattttgttgttactgtatgaatttataattttaatttgttccc |
29054067 |
T |
|
| Q |
105 |
agtaacttcggcttttctttataaaagattgtactattttaatttgtttaggttagattagatgtgaatgtgattggattgggtgtcctgccatatataa |
204 |
Q |
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| T |
29054066 |
agtaacttctgcttttctttataaaagattgtactattttaatttgtttaggttagattagatgtgaatgtgattggattgggtgtcctgccatatataa |
29053967 |
T |
|
| Q |
205 |
taatgcatttttatatgaaactcatctactgtatttcttttggtggtgaaatcatctaccgtttgctgctaccagcattgggtgtttgtcttaccgccga |
304 |
Q |
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| T |
29053966 |
taatgcatttttatatgaaactcatctactgtatttcttttggtggtgaaatcatctaccgtttgctgctaccagcattgggtgtttgtcttaccgccga |
29053867 |
T |
|
| Q |
305 |
aagtacatattatggtgaagtgggccattgagatgccagtgtaattatataatttcttaaggaatgacattaagttcatctttgaacaataagtattaat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29053866 |
aagtacatattatggtgaagtgggccattgagatgccagtgtaattatataatttcttaaggagtgacattaagttcatctttgaacaataagtattaat |
29053767 |
T |
|
| Q |
405 |
gtaatcatgttgaaacttgtcacacacccaaagggccagattgtagacagtgctctagaggattgaattaatgatcctgcgttagtgtttgagttagcat |
504 |
Q |
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| T |
29053766 |
gtaatcatgttgaaacttgtcacacgcccaaagggccagattgtagacagtgctctagaggattgaattaatgatcctgcgttagtgtttgagttagcat |
29053667 |
T |
|
| Q |
505 |
tttgtgagtttgtttgtaagtagggcaagtggcataaaaactactgcagaataataat------------atagtcattgttagtgttgtcttcgtacaa |
592 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29053666 |
tttgtgagtttgtttgtaagtagggcaagtggcataaaaactactgcagaataataatatagccttcctgatagtcattgttagtgttgtcttcgtacaa |
29053567 |
T |
|
| Q |
593 |
gtttgtatgcaaagactatgaacactacttcatcacaatatcatgcttggcagaagatattatgtaccttttcaatatcattcctaatgttttcttcttt |
692 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29053566 |
gtttgtatgcaaaaactatgaacactgcttcatcacaatatcatgcttggcagaagatattatgtaccttttcaatatcattcctagtgttttcttcttt |
29053467 |
T |
|
| Q |
693 |
tcatgttagtctaactcaata |
713 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29053466 |
tcatgttagtctaactcaata |
29053446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 712 - 793
Target Start/End: Complemental strand, 29053162 - 29053081
Alignment:
| Q |
712 |
taaatttatgtcttatataagcattttaagacttgaatgaaaatgtggtccttttatttatgcttcagaacccttgctgata |
793 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29053162 |
taaatttatgtcttatataagcattttaagacttgaatgaaaatgtggtccttttatttatgcttcagaacccttgctgata |
29053081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 715 - 760
Target Start/End: Complemental strand, 29057737 - 29057692
Alignment:
| Q |
715 |
atttatgtcttatataagcattttaagacttgaatgaaaatgtggt |
760 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
29057737 |
atttatgtctaatataagcattttaagacttgcatgaaaatgtggt |
29057692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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