View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1375-Insertion-8 (Length: 865)

Name: NF1375-Insertion-8
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1375-Insertion-8
NF1375-Insertion-8
[»] chr6 (5 HSPs)
chr6 (98-865)||(1872545-1873316)
chr6 (5-73)||(1872477-1872545)
chr6 (43-89)||(779760-779806)
chr6 (8-83)||(10240877-10240950)
chr6 (17-74)||(30603469-30603526)
[»] chr1 (1 HSPs)
chr1 (13-89)||(45464267-45464347)
[»] chr3 (1 HSPs)
chr3 (28-89)||(3727274-3727335)
[»] chr5 (2 HSPs)
chr5 (37-80)||(18900979-18901022)
chr5 (14-74)||(1978536-1978595)
[»] chr4 (4 HSPs)
chr4 (28-89)||(5958679-5958740)
chr4 (5-82)||(23472071-23472147)
chr4 (5-74)||(30015220-30015289)
chr4 (5-65)||(19420351-19420409)
[»] chr2 (1 HSPs)
chr2 (27-79)||(8966793-8966845)
[»] chr7 (1 HSPs)
chr7 (15-89)||(48433149-48433223)
[»] chr8 (1 HSPs)
chr8 (5-54)||(40756914-40756963)


Alignment Details
Target: chr6 (Bit Score: 738; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 98 - 865
Target Start/End: Original strand, 1872545 - 1873316
Alignment:
Q  98 agatcaaagttgtaaatcaaatgacaaaagaaaagttcctaactataccagttaagaaaaaagtggctggttacactaaagtttagttagtgattcattg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872545 agatcaaagttgtaaatcaaatgacaaaagaaaagttcctaactataccagttaagaaaaaagtggctggttacactaaagtttagttagtgattcattg 1872644  T
Q  198 taatgaataagga---ttcatcactgtgaatcaagattcaacataaacaagattttcactgtgcataaccatataagatcagattaacatttacaatcac 294  Q
    |||||||||||||   |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1872645 taatgaataaggaggattcatcatagtgaatcaagattcaacataaacaagattttcactgtgtataaccatataagatcagattaacatttacaatcac 1872744  T
Q  295 caaatccaatttcatcatacaatggagtcagaagatctttttgaacaaagaaaggaactgtatttcatatattttctctctaataatacatcaaaatatt 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872745 caaatccaatttcatcatacaatggagtcagaagatctttttgaacaaagaaaggaactgtatttcatatattttctctctaataatacatcaaaatatt 1872844  T
Q  395 atgccacaatctcaaaattagcaaaccaaattcttttggaactctaatgcaaagtgaagcagcttcaatcaatggattgaaatgaataatcaagtgaatg 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872845 atgccacaatctcaaaattagcaaaccaaattcttttggaactctaatgcaaagtgaagcagcttcaatcaatggattgaaatgaataatcaagtgaatg 1872944  T
Q  495 aagaaacaaagttaatatagatacctttcattatttcatacaccatgattctgcaaatctttgttaagataagatggcaatgtcattccattatgagctt 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872945 aagaaacaaagttaatatagatacctttcattatttcatacaccatgattctgcaaatctttgttaagataagatggcaatgtcattccattatgagctt 1873044  T
Q  595 ctaaagaactagaagaaaattttccctttcttggccataaccaaatcttggaaatagaaaaactttcacctttactaacattactaatcttctttccttc 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1873045 ctaaagaactagaagaaaattttccctttcttggccataaccaaatcttggaaatagaaaaactttcacctttactaacattactaatcttctttccttc 1873144  T
Q  695 caaatcactctcaacaccattttcaattcctttgataatccttgtatcatgatgagttatactctcatggtttaaggctacccttaactctgaatttcca 794  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1873145 caaatcactctcaacaccattttcaattcctttgataatccttgtatcatgatgagttatactctcatggtttaaggctacccttaactctgaatttcca 1873244  T
Q  795 accacatattgataagatcccattgaataacatcttcttgcatcc-aattactactacttgtttcccctact 865  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1873245 accacatattgataagatcccattgaataacatcttcttgcatccaaattactactacttgtttcccctact 1873316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 1872477 - 1872545
Alignment:
Q  5 acattactaataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatata 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1872477 acattactaataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatata 1872545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 779806 - 779760
Alignment:
Q  43 aagtgacatagcaaaattataagctaatatattatatacaaacctca 89  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||||||    
T  779806 aagtgacatagcaaacttataagctaatatatcatataaaaacctca 779760  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 10240877 - 10240950
Alignment:
Q  8 ttactaataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatatattatatacaa 83  Q
    |||||||||||||||||||||||| ||| ||||| |||||||  | | | ||||||||| ||||||| ||||||||    
T  10240877 ttactaataaaaatatgatatttttaagtaaaaataagtgac--aactatattataagcaaatatatcatatacaa 10240950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 30603526 - 30603469
Alignment:
Q  17 aaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatatat 74  Q
    ||||||||| ||||| ||| |||||||| ||||||||||||| |||||| | ||||||    
T  30603526 aaaatatgaaatttttaagtaaaaacaaatgacatagcaaaactataagttgatatat 30603469  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 45464347 - 45464267
Alignment:
Q  13 aataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagcta----atatattatatacaaacctca 89  Q
    ||||||||||||||||||| ||| |||||||||||| | ||||||| |||||||||    |||||| ||||||||||||||    
T  45464347 aataaaaatatgatatttttaagtaaaaacaagtgatacagcaaaaatataagctaatacatatatcatatacaaacctca 45464267  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 3727335 - 3727274
Alignment:
Q  28 ttttgaagcaaaaacaagtgacatagcaaaattataagctaatatattatatacaaacctca 89  Q
    |||| ||| |||||||||||||||||| |||||||||||| |||||| |||||| |||||||    
T  3727335 ttttaaagtaaaaacaagtgacatagctaaattataagctgatatatcatatacgaacctca 3727274  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 18901022 - 18900979
Alignment:
Q  37 aaaaacaagtgacatagcaaaattataagctaatatattatata 80  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  18901022 aaaaacaagtgacataacaaaattataagctagtatattatata 18900979  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 1978536 - 1978595
Alignment:
Q  14 ataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatatat 74  Q
    |||||||||||| ||||| ||| || |  ||||||||||||||||||||||||||||||||    
T  1978536 ataaaaatatgacatttttaagtaagat-aagtgacatagcaaaattataagctaatatat 1978595  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 5958740 - 5958679
Alignment:
Q  28 ttttgaagcaaaaacaagtgacatagcaaaattataagctaatatattatatacaaacctca 89  Q
    |||| ||| |||||||| ||||| |||||||||||||  | |||||||||||||||||||||    
T  5958740 tttttaagtaaaaacaaatgacaaagcaaaattataaattgatatattatatacaaacctca 5958679  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 23472071 - 23472147
Alignment:
Q  5 acattactaataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatatattatataca 82  Q
    ||||||| |||| |||||||| ||||| ||| |||| || ||||||||| ||||||||||||| |||||| |||||||    
T  23472071 acattaccaatacaaatatgacatttttaagtaaaaccatgtgacatagaaaaattataagct-atatatcatataca 23472147  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 30015220 - 30015289
Alignment:
Q  5 acattactaataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatatat 74  Q
    ||||||| |||| |||||||| ||||| ||| ||||||||||||||| | ||| || |||||||||||||    
T  30015220 acattacaaatataaatatgacatttttaagtaaaaacaagtgacatgggaaagttttaagctaatatat 30015289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 19420409 - 19420351
Alignment:
Q  5 acattactaataaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataag 65  Q
    |||||| |||||| ||||||| ||||| ||| |||||||||||||  ||||||||||||||    
T  19420409 acattattaataacaatatgacattttaaagtaaaaacaagtgac--agcaaaattataag 19420351  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 8966793 - 8966845
Alignment:
Q  27 attttgaagcaaaaacaagtgacatagcaaaattataagctaatatattatat 79  Q
    ||||| ||| |||||||| |||| ||||||||||||||||| |||||||||||    
T  8966793 attttaaagtaaaaacaaatgacgtagcaaaattataagctgatatattatat 8966845  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 48433149 - 48433223
Alignment:
Q  15 taaaaatatgatattttgaagcaaaaacaagtgacatagcaaaattataagctaatatattatatacaaacctca 89  Q
    |||||||||| |||||  ||| ||||||||||||| | |||||| |||||| | |||||| |||||| |||||||    
T  48433149 taaaaatatggtatttctaagtaaaaacaagtgacttggcaaaaatataagttgatatatcatatacgaacctca 48433223  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 40756963 - 40756914
Alignment:
Q  5 acattactaataaaaatatgatattttgaagcaaaaacaagtgacatagc 54  Q
    ||||||||||||||||| ||||||| | |||  |||||||||||||||||    
T  40756963 acattactaataaaaatttgatattgttaagagaaaacaagtgacatagc 40756914  T

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