View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375-Insertion-9 (Length: 509)
Name: NF1375-Insertion-9
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 4405533 - 4405202
Alignment:
| Q |
8 |
attgctacaaaatgccgccacnnnnnnnngatattgatttgactgcaatactttcctagtccaaaaatctctcgcaaagttgccacgtgcaaactacgac |
107 |
Q |
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| T |
4405533 |
attgctacaaaatgccgccacaaaaaaaagatattgatttgactgcaatactttcctagtccaaaaatctctcgcaaagttgccacgtgcaaactacgac |
4405434 |
T |
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| Q |
108 |
ctggaaaacccttcgcaaaaaacctttttcaaaagattgcatatgccaatggaaaccttacttttaaactcgaaattccaaaaatttggtagtaataaag |
207 |
Q |
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| T |
4405433 |
ctggaaaacccttcgcaaaaaacctttttcaaaagattgcatatgccaatggaaaccttacttttaaattcgaaattccaaaaatttggtagtaataaag |
4405334 |
T |
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| Q |
208 |
agagggcttaccactgtcttctgttatactcatgagagatgtttccagaaaaagatgattgttctttcttttgtgcataatgtttctcaggggtatggcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4405333 |
agagggcttaccactgtcttctgttatactcatgagagatgtttccagaaaaagatgattgttctttcttttgtgcataatgtttctcaggggtatggcc |
4405234 |
T |
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| Q |
308 |
atgacatatcgtcagaaaagcatgaggccatg |
339 |
Q |
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| T |
4405233 |
atgacatatcgtcagaaaagcatgaggccatg |
4405202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 328 - 509
Target Start/End: Complemental strand, 4403991 - 4403810
Alignment:
| Q |
328 |
catgaggccatgtcaagtgttccatggggtttatcgttcccatggcctcgcaaggggtacacctctgtcataaaggtctttatagtcaaaaacatgtcca |
427 |
Q |
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| T |
4403991 |
catgaggccatgtcaagtgtcccatggggtttatcgttcccatggcctcgcaaggggtacacctctgtcataaaggtctttatagtcaaaaacatgtcca |
4403892 |
T |
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| Q |
428 |
caatctcatttacacccaaaatctcattcactctttccctcacgctttttgtcttccccagcaaaccaatcatgtttttctt |
509 |
Q |
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| T |
4403891 |
caatctcatttacacccaaaatctcattcactctttccctcacgctttttgtcttccccagcaaaccaatcatgtttttctt |
4403810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 507
Target Start/End: Complemental strand, 21155372 - 21155298
Alignment:
| Q |
433 |
tcatttacacccaaaatctcattcactctttccctcacgctttttgtcttccccagcaaaccaatcatgtttttc |
507 |
Q |
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|||||||||||||||| ||||| |||||| |||||| | |||| ||||||||||||| ||||||||||||||| |
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| T |
21155372 |
tcatttacacccaaaaattcatttactcttcccctcatgtttttcttcttccccagcaacccaatcatgtttttc |
21155298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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